Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGCATGAAGGGAGCTGTCTCAAAGGCTGAAGAGATTGTGAGCAAGACACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatattatcaattcttttctaccacataactttctcttctcttttgctacag

Basic information

species Selaginella moellendorffii
transcript EFJ17923
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17923 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S71_187V6.1 (Physcomitrella patens), 5'ss of exon 4
CAAAGGCATGAAGGGAGCTGTCTCAAAGGCTGAAGAGATTGTGAGCAAGACACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatattatcaattcttttctaccacata--actttctcttctcttttgctacag-----------------------------------------------------------------------
||| || ||||| || |||||    ||||| ||||| |||||||  || || || ||| |||||||||| || ||||||||||| |||||||| ||||| |||    ||     ||       |   | |||     || | |    | |||  | |                                                                        
CAAGGGAATGAAAGGCGCTGTTCAGAAGGCGGAAGAAATTGTGAAGAAAACTCCCAATTCGTACATGCTCCAACAATTTGAGAATCCAGCTAACCCGAAGgtatttcatccggcatgtggcggttgtaaatactgacttatgtgaagtcttgaaaaaatgatagttgagggtagttctcatgtttatcagaagatgttgtagttgctgatcgttgtttgtgtcatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169104263|gb|FE503703.1|FE503703
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169062207|gb|FE469721.1|FE469721
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169055710|gb|FE465328.1|FE465328
EST:     TGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: TGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169105858|gb|FE505180.1|FE505180
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169056758|gb|FE465985.1|FE465985
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169040531|gb|FE449246.1|FE449246
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
EST: gi|169056757|gb|FE465984.1|FE465984
EST:     CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAA                         ATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA
genomic: CACCAAATGCGTACATGCTTCAGCAATTTGAGAACCCAGCTAATCCGAAAgtaagatatt ... tttgctacagATTCACTTTGAAACCACGGGACCAGAGGTCTGGGAAGACACCCGAGGAAAA