1 5' 3' | 2 5' 3' | 3 5' 3' |
CATTTTCCACTCGCACCAGCTCACGATGCGGCTCAACGAGGAGGACTTCAAGAGCGTCCAGATGCGAAAGGAGCTCAAGCCCAGAACCTTCCGCATAAAGgtaacgtttttccgctgaggtcgtctacgttctaaagctgtagtatcaatgtag
species | Selaginella moellendorffii |
transcript | EFJ17201 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAGCGTCCAGATGCGAAAGGAGCTCAAGCCCAGAACCTTCCGCATAAAG GTTGGCCACAGCATCCAAGTGGGAGGATACCTGAGACTGGATCTCTTAGAAEST: gi|169080824|gb|FE486656.1|FE486656
genomic: AGAGCGTCCAGATGCGAAAGGAGCTCAAGCCCAGAACCTTCCGCATAAAGgtaacgtttt ... atcaatgtagGTTGGCCACAGCATCCAAGTGGGAGGATACTTGAGACTGGATCTCTTAGAA
EST: AGAGCGTCCAGATGCGAAAGGAGCTCAAGCCCAGAACCTTCCGCATAAAG GTTGGCCACAGCATCCAAGTGGGAGGATACTTGAGACTGGATCTCTTAGAAEST: gi|169042539|gb|FE453698.1|FE453698
genomic: AGAGCGTCCAGATGCGAAAGGAGCTCAAGCCCAGAACCTTCCGCATAAAGgtaacgtttt ... atcaatgtagGTTGGCCACAGCATCCAAGTGGGAGGATACTTGAGACTGGATCTCTTAGAA
EST: AGAGCGTCCAGATGCGAAAGGAGCTCAAGCCCAGAACCTTCCGCATAAAG GTTGGCCACAGCATCCAAGTGGGAGGATACCTGAGACTGGATCTCTTAGAA
genomic: AGAGCGTCCAGATGCGAAAGGAGCTCAAGCCCAGAACCTTCCGCATAAAGgtaacgtttt ... atcaatgtagGTTGGCCACAGCATCCAAGTGGGAGGATACTTGAGACTGGATCTCTTAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTTTCCACTCGCACCAGCTCACGATGCGGCTCAACGAGGAGGACTTCAAGAGCGTCCAGATGCGAAAGGAGCTCAAGCCCAGAACCTTCCGCATAAAGgtaacgtttttccgctgaggtcgtctacgttctaaagctgtagtatcaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA