1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCAGTCGCCAGGGCGCAGAAATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAGgtaacgatttggattcttggagcttgaaatttcacatttctcttcgcttcatag
species | Selaginella moellendorffii |
transcript | EFJ17161 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAG AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAEST: gi|169051355|gb|FE459213.1|FE459213
genomic: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAGgtaacgattt ... cgcttcatagAGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGA
EST: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAG AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAEST: gi|169110842|gb|FE509325.1|FE509325
genomic: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAGgtaacgattt ... cgcttcatagAGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGA
EST: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAG AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAEST: gi|169039069|gb|FE448785.1|FE448785
genomic: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAGgtaacgattt ... cgcttcatagAGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGA
EST: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAG AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAEST: gi|70670052|gb|DN838629.1|DN838629
genomic: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAGgtaacgattt ... cgcttcatagAGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGA
EST: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAG AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAEST: gi|169106956|gb|FE508839.1|FE508839
genomic: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAGgtaacgattt ... cgcttcatagAGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGA
EST: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAG AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAEST: gi|169041727|gb|FE449298.1|FE449298
genomic: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAGgtaacgattt ... cgcttcatagAGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGA
EST: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAG AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGAEST: gi|169033527|gb|FE442079.1|FE442079
genomic: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAGgtaacgattt ... cgcttcatagAGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGA
EST: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAG AGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGA
genomic: ATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAGgtaacgattt ... cgcttcatagAGGGCAAGACCGATTATCGGGCTCGGGTGCGCTTGACGAATCAGGACAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGTCGCCAGGGCGCAGAAATCCAAATCCTACTACAAGAGGTACCAGGTCAAGTACCGCCGCCGAAGAGgtaacgatttggattcttggagcttgaaatttcacatttctcttcgcttcatag
- - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA