1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGTTGGAGTGACTTTGGGTCCCAAAGGAAGGAATGTCGTCCTCGAGAGTAAGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAAgtatgtgtcttgtctttcttgttgatgctgtggtttgctgatggaaatgtattttag
species | Selaginella moellendorffii |
transcript | EFJ16507 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAA ATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAAEST: gi|169052991|gb|FE460706.1|FE460706
genomic: AGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAAgtatgtgtct ... tgtattttagATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAA
EST: AGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAA ATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAAEST: gi|169088898|gb|FE494423.1|FE494423
genomic: AGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAAgtatgtgtct ... tgtattttagATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAA
EST: AGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAA ATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAAEST: gi|169076091|gb|FE484393.1|FE484393
genomic: AGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAAgtatgtgtct ... tgtattttagATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAA
EST: AGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAA ATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAAEST: gi|169082802|gb|FE486257.1|FE486257
genomic: AGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAAgtatgtgtct ... tgtattttagATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAA
EST: AGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAA ATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAA
genomic: AGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAAgtatgtgtct ... tgtattttagATTGAATTGGAAGACCCGGTTGAGAACATTGGTGTGAAACTCGTGAGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGGAGTGACTTTGGGTCCCAAAGGAAGGAATGTCGTCCTCGAGAGTAAGTATGGTTCTCCAAAGATTATCAACGATGGTGTCACGGTGACCAAGGAAgtatgtgtcttgtctttcttgttgatgctgtggtttgctgatggaaatgtattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA