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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTCTGGATGTCCAGGCTTGCTGGAGATGGATTTGGAGCAACGCATGCAATGATCCGGCACCATGGGTGGTGTCGGGAGTGCATGTCCAATGCTTCATGgtatgctcactttcttcttttgatttctttttctgtcccaaactttgtgacgatctttgtggatctttgtag

Basic information

species Selaginella moellendorffii
transcript EFJ15932
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15932 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S3_298V6.1 (Physcomitrella patens), 5'ss of exon 2
ACGTCTGGATGTCCAGGCTTGCTGGAGATGGATTTGGAGCAACGCATGCAATGATCCG---GCACC--ATGGGTGGTGTCGG--GAGTGCATGTCCA-----------ATGCTTCATGgtatgc--tcactttcttcttttgatttctttttctgtcccaa----actttgtgacgatctttgtggatctttgtag----------------------
                  ||||||||||||| ||||||||||||| |||||||    |   | | |  ||  | |  ||| |  |  |||| |||||           || || | ||||| ||    |         | |   |  || | || | ||||    |||| ||| |    |   |     | | | |                      
------------------TTGCTGGAGATGGTTTTGGAGCAACGCGTGCAATGTCTTGCAGGAATCTAATTTGGGTCGTCAGCCGGATGCAAGTCCACGTTGAGCAGTATCCTGCGTGgtacgcaacgagacagacgatctccctctttatgctatgccaatttgacttcgtggcctattaaatactcatatttcgtaaaatcgtcaataggatccga