1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTACAAGGCATCCTTTGTTCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagttttttttttttcttataatctgtagagagtttggtaataaatcag
species | Selaginella moellendorffii |
transcript | EFJ15233 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGAGCTAGGAGCTCGACCGCAACAGCCCAEST: gi|70669827|gb|DN838404.1|DN838404
genomic: GCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGAGCTAGGAGCTCGACCGCAACAGCCCAEST: gi|169078264|gb|FE487333.1|FE487333
genomic: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGAGCTAGGAGCTCGACCGCAACAGCCCAEST: gi|169042434|gb|FE453437.1|FE453437
genomic: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGAGCTAGGAGCTCGACCGCAACAGCCCAEST: gi|169065621|gb|FE474328.1|FE474328
genomic: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGAGCTAGGAGCTCGACCGCAACAGCCCAEST: gi|169065620|gb|FE474327.1|FE474327
genomic: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: CCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGAGCTAGGAGCTCGACCGCAACAGCCCAEST: gi|169062994|gb|FE471100.1|FE471100
genomic: CCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGAGCTAGGAGCTCGACCGCAACAGCCCAEST: gi|169049163|gb|FE457151.1|FE457151
genomic: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCAEST: gi|169062995|gb|FE471101.1|FE471101
genomic: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGAGCTAGGAGCTCGACCGCAACAGCCCAEST: gi|169049164|gb|FE457152.1|FE457152
genomic: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCAEST: gi|169042435|gb|FE453438.1|FE453438
genomic: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGAGCTAGGAGCTCGACCGCAACAGCCCAEST: gi|169045907|gb|FE453921.1|FE453921
genomic: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
EST: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAG GACAGAAGCTCGTGGAGACTGCAGAGCTAGGAGCTCGACCGCAACAGCCCA
genomic: TCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagtt ... aataaatcagGACAGAAGCTCGTGGAGACTGCAGTGCTAGGAGCTCGACCACAACAGCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAAGGCATCCTTTGTTCCCAAGGAGCAAGTTCCACCGTCGCAGTACTCGCTCTTTGATTTTGGAGgtaaaaagttttttttttttcttataatctgtagagagtttggtaataaatcag
- - - - - - - - - - - AAGGAG
- - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG