1 5' 3' | 2 5' 3' | 3 5' 3' |
GGCGCTCCTCTCGGGGCTCAATCTCACATGGAGCGCGCTCACCGCCGCCGTGGCGCTCATGGTGCTGGATTTCTCCGACGCTGGCCCCAGCTTGGACAGGgtaagtgccaccctcgatcaatcattcccccctcctcttttcgttcgatcgatccgatcgattctagggtaccatcatctatgccctttttcctcgattc...
species | Selaginella moellendorffii |
transcript | EFJ14419 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGCGCTCATGGTGCTGGATTTCTCCGACGCTGGCCCCAGCTTGGACAGG GTCTCTTATTCGCTGCTCGTCTTCTTTTCCGGGATGTTCATCACCGTGGATEST: gi|169094344|gb|FE495570.1|FE495570
genomic: TGGCGCTCATGGTGCTGGATTTCTCCGACGCTGGCCCCAGCTTGGACAGGgtaagtgcca ... tttgttccagGTCTCTTATTCGCTGCTCGTCTTCTTTTCCGGGATGTTCATCACCGTGGAT
EST: GACGCTGGCCCCAGCTTGGACAGG GTCTCTTATTCGCTGCTCGTCTTCTTTTCCGGGATGTTCATCACCGTGGATEST: gi|169048166|gb|FE455438.1|FE455438
genomic: GACGCTGGCCCCAGCTTGGACAGGgtaagtgcca ... tttgttccagGTCTCTTATTCGCTGCTCGTCTTCTTTTCCGGGATGTTCATCACCGTGGAT
EST: TGGCGCTCATGGTGCTGGATTTCTCCGACGCTGGCCCCAGCTTGGACAGG GTCTCTTATTCGCTGCTCGTCTTCTTTTCCGGGATGTTCATCACCGTGGATEST: gi|169041674|gb|FE449583.1|FE449583
genomic: TGGCGCTCATGGTGCTGGATTTCTCCGACGCTGGCCCCAGCTTGGACAGGgtaagtgcca ... tttgttccagGTCTCTTATTCGCTGCTCGTCTTCTTTTCCGGGATGTTCATCACCGTGGAT
EST: TGGCGCTCATGGTGCTGGATTTCTCCGACGCTGGCCCCAGCTTGGACAGG GTCTCTTATTCGCTGCTCGTCTTCTTTTCCGGGATGTTTATCACCGTGGAT
genomic: TGGCGCTCATGGTGCTGGATTTCTCCGACGCTGGCCCCAGCTTGGACAGGgtaagtgcca ... tttgttccagGTCTCTTATTCGCTGCTCGTCTTCTTTTCCGGGATGTTCATCACCGTGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCTCCTCTCGGGGCTCAATCTCACATGGAGCGCGCTCACCGCCGCCGTGGCGCTCATGGTGCTGGATTTCTCCGACGCTGGCCCCAGCTTGGACAGGgtaagtgccaccctcgatcaatcattcccccctcctcttttcgttcgatcgatccgatcgattctagggtaccatcatctatgccctttttcctcgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttttcc