1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAGTAAGAAGGATGTGAAGCTTCAAGCCAAGGATAACAAAAATGGGACTTTGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggttttcttcatagtgttttagctaaggctcgtagttcag
species | Selaginella moellendorffii |
transcript | EFJ12424 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAG TGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGAEST: gi|169049031|gb|FE456109.1|FE456109
genomic: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggtttt ... cgtagttcagTGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGA
EST: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAG TGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGAEST: gi|169060063|gb|FE468673.1|FE468673
genomic: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggtttt ... cgtagttcagTGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGA
EST: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAG TGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGAEST: gi|169071863|gb|FE477617.1|FE477617
genomic: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggtttt ... cgtagttcagTGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGA
EST: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAG TGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGAEST: gi|169060062|gb|FE468672.1|FE468672
genomic: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggtttt ... cgtagttcagTGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGA
EST: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAG TGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGAEST: gi|169099356|gb|FE502129.1|FE502129
genomic: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggtttt ... cgtagttcagTGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGA
EST: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAG TGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGAEST: gi|169071864|gb|FE477618.1|FE477618
genomic: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggtttt ... cgtagttcagTGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGA
EST: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAG TGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGAEST: gi|169053952|gb|FE461251.1|FE461251
genomic: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggtttt ... cgtagttcagTGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGA
EST: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAG TGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGAEST: gi|169099357|gb|FE502130.1|FE502130
genomic: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggtttt ... cgtagttcagTGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGA
EST: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAG TGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGA
genomic: TGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggtttt ... cgtagttcagTGCAGGAAAAGACAGGATTTGTATCTGTGGATGACTAAGTTTCCTGGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTAAGAAGGATGTGAAGCTTCAAGCCAAGGATAACAAAAATGGGACTTTGAATGAGATTGCCGAGCTTCGAGGATGCACGAGCTGTTTGTACTTCGAGgtgaggttttcttcatagtgttttagctaaggctcgtagttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT