1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGGACGATGATCTCTACAGGGCCCGTAGCATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATGgtaaagcttttcttcttcgctctttccagcgttttggatctggattgatcggtgagttttccag
species | Selaginella moellendorffii |
transcript | EFJ12166 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATG GACTGTTTCTACGCCTCCTCCTGGGACCAGTGAACGTCCGAGCTACCCGGAEST: gi|70669921|gb|DN838498.1|DN838498
genomic: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATGgtaaagcttt ... agttttccagGACTGTTTCTACGCCTCCTCCTGGGGCCAGTGAACGTCCGAGCTACCCGGA
EST: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATG GACTGTTTCTACGCCTCCTCCTGGGACCAGTGAACGTCCGAGCTACCCGGAEST: gi|169053304|gb|FE462579.1|FE462579
genomic: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATGgtaaagcttt ... agttttccagGACTGTTTCTACGCCTCCTCCTGGGGCCAGTGAACGTCCGAGCTACCCGGA
EST: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATG GACTGTTTCTACGCCTCCTCCTGGGACCAGTGAACGTCCGAGCTACCCGGAEST: gi|169031684|gb|FE437485.1|FE437485
genomic: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATGgtaaagcttt ... agttttccagGACTGTTTCTACGCCTCCTCCTGGGGCCAGTGAACGTCCGAGCTACCCGGA
EST: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATG GACTGTTTCTACGCCTCCTCCTGGGACCAGTGAACGTCCGAGCTACCCGGAEST: gi|169056974|gb|FE466201.1|FE466201
genomic: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATGgtaaagcttt ... agttttccagGACTGTTTCTACGCCTCCTCCTGGGGCCAGTGAACGTCCGAGCTACCCGGA
EST: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATG GACTGTTTCTACGCCTCCTCCTGGGACCAGTGAACGTCCGAGCTACCCGGAEST: gi|169032393|gb|FE440950.1|FE440950
genomic: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATGgtaaagcttt ... agttttccagGACTGTTTCTACGCCTCCTCCTGGGGCCAGTGAACGTCCGAGCTACCCGGA
EST: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATG GACTGTTTCTACGCCTCCTCCTGGGACCAGTGAACGTCCGAGCTACCCGGA
genomic: CATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATGgtaaagcttt ... agttttccagGACTGTTTCTACGCCTCCTCCTGGGGCCAGTGAACGTCCGAGCTACCCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGACGATGATCTCTACAGGGCCCGTAGCATGATCTACGAGGGTGATGTCGCAGCTCTTCTTCCTCACAAGTCGAATGgtaaagcttttcttcttcgctctttccagcgttttggatctggattgatcggtgagttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC