Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttcctcag

Basic information

species Selaginella moellendorffii
transcript EFJ11589
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os03g10340.1 (Oryza sativa), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttcctcag-----------------------------------------------------------------------
                                                     ||||||||||| || |||||||| |||||||||  ||||||||| | || ||||       | ||     |    ||     || || | | |                                                                          
CGCGCCGCCGCCGCCGCCGAGCGCCTGGAGCAGCGTCAGCCATGGCCGTAGGTAAGAACAAGCGCATCTCCAAGGGGAAGAAGGGATCCAAGAAGAAGACgtgagtgccc--tcctgcccaccgttctctcctcctcctcctgcttagagatccaaaccccttcatttttactcgctagtcgctacatgggttgttgatgcagctttgcatttcttgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: LOC_Os12g21798.1 (Oryza sativa), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgat---ttcttctttcctcag--------------------------------------------------------------
                                                     |||||||||||||| || ||||| |||||||||  ||||||||| | || |||  ||  | |  |      ||  | |  |   | |||||| | |  |                                                              
GACGCCGCCCGAGCACCACCGGAGCAGGAGCAGCGTCAGCCATGGCCGTCGGCAAGAACAAGCGGATCTCGAAGGGGAAGAAGGGATCCAAGAAGAAGACgtgagt--ttacctctcccccccaccctcctcgtccgtccttcttcctttcgctcttggttgccatggcgcatgggtgttgatgtggcttcctgctcgttcgtttttcttgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G030915_T01 (Zea mays), 5'ss of exon 1
---------------------------------------------------------------------------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttcctcag
                                                                                                                     |||||||||| |||| ||||||||||||||||| |||||||| || | || |||  |||          ||||||| |  || ||    ||| ||| 
TAGTAGTCCGCTCTGCCTCCGAAGTGCTTTCTCCCGCAGAGCAGCCGACAACTCTCTACCGTCCGAGACCCCAAGCACCAGCGCGGCGGCGGCGgcggcggcgaccatggctgtcgggaagaacaagaggatctccaagggaaagaagggtggcaagaaaaagacgttagt--ttg---------cttgcctgtt--atatcccagttcttca-

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G030915_T04 (Zea mays), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagt--gtttggc-gcagcgttttgcctgcttgatttcttctttcctcag------------------------------------------------
                                                    |||||||||| |||| ||||||||||||||||| |||||||| || | || |||  | ||| | |     |      |  |    |    |||   ||                                                  
AGACCCCAAGCACCAGCGCGGCGGCGGCGGCGGCGGCGACCATGGCTGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtggttgcgata

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G030915_T03 (Zea mays), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaag--tgtttggc-gcagcgttttgcctgcttgatttcttctttcctcag--------------------------------------------------------------
                                                    |||||||||| |||| ||||||||||||||||| |||||||| || | || ||  || ||| | |     |      |  |    |    |||   ||                                                                
AGACCCCAAGCACCAGCGCGGCGGCGGCGGCGGCGGCGACCATGGCTGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtggttgcgatacttcttttatgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G030915_T08 (Zea mays), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaag--tgtttggc-gcagcgttttgcctgcttgatttcttctttcctcag--------------------------------------------------------------
                                                     ||||||||| |||| ||||||||||||||||| |||||||| || | || ||  || ||| | |     |      |  |    |  | |||   ||                                                                
TACCGTCCGATACCCCAAGCACCAGCGCGGCGGCGGCGACCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatcttacttgggtcgattgctttctttctttatccgttgctgatgcggttgcgtggttgcgttacttcttttatgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G030915_T01 (Zea mays), 5'ss of exon 2
-----------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagt--gtttggc-gcagcgttttgcctgcttgatttcttctttcctcag--------------------------------------------------------------
                        ||||||||| |||| ||||||||||||||||| |||||||| || | || |||  | ||| | |     |      |  |    |  | |||   ||                                                                
GCGGCGGCGACCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatcttacttgggtcgattgctttctttctttatccgttgctgatgcggttgcgtggttgcgttacttcttttatgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G145258_T01 (Zea mays), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaag--tgtttggc-gcagcgttttgcctgcttgatttcttctttcctcag--------------------------------------------------------------
                                                     ||||||||| |||| ||||||||||||||||| |||||||| || | || ||  || ||| | |     |      |  |    |  | |||   ||                                                                
AGACCCCAAGCACCAGCGCGGCGGCGGGGGCGGCGGCGACCATGGCTGTCGGAAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGCAAGAAAAAGACgttagtttgcttgcctgttatatcccagttcttcagatcttgcttgtgtcgattgctttttttctttatccgttgctgatgcggttctgtggttgcgttacatcatttatgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G013457_T01 (Zea mays), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgt-ttggcgcagcgttttgcctgcttgatttcttctttcctcag--------------------------------------------------------------
                                                    |||||||||| |||| ||||||||||||||||| || ||||| || | |||||| |  | ||   |   ||  | | ||| |  |||   |   |||                                                               
TAGTCTGTACCCCAAGCACCGGCGCGGCGGCGGCGGCTACCATGGCAGTCGGGAAGAACAAGAGGATCTCCAAGGGAAAGAAGGGTGGTAAGAAAAAGACgtaagtttgcttgcat-gttcttcccgttcttcacatctatctcggtcaattgcttcgtttctggagcttctgctgatgcggttgtgtgtctgtgttccttttgtcttacag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GLYMA11G00890.1 (Glycine max), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttc--ctcag-------------------------------
                                                     ||||| ||| |||||||||||||||||||||| ||||||||||||  || ||||       |     ||  |    ||  | ||| ||||   ||| |                               
CAGCCGCAGCTTGAAACAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattccctt-cttcactcttttattctctcctttaaactctgatttctttcttcttcttccgtgattccacag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GLYMA01G44700.1 (Glycine max), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttgg-cgcagcgttttgcctgcttgatttcttctttcctcag----------------------------------------------------------
                                                     ||||| ||| |||||||||||||||||||||| ||||||||||||  || ||||      | |  |  |||   |  ||  ||| ||  || ||                                                             
CAGCCGCACCTTGATTCAGAGCAGAGCGACCTTGAAGAGCTATGGCTGTCGGAAAGAATAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAGCgttagtgcccattctcttcacttttttttttttttttttttatttctattgtcgtattctccattttaactctgatttgtttcttcttcttcttccgtgaatccacag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GLYMA10G39050.1 (Glycine max), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgct---tgatttcttctttcctcag---------------------------------------------------
                                                     ||||||||||| || |||||||| |||||||| |||||||||||   || ||| | |  |    | |||  |||  |   || ||| ||  |   |  |                                                   
TCATCCGCAGCTGCTTTTATTCGCACCGCAAACAGTGAGCCATGGCCGTCGGAAAGAACAAGCGCATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAGGCgttagtatcttccatttcttttccccttttctctgttttatttgtgtttttgctttaacattcaaaattcaatgacgtgtttggtttgtgtgtgaatgtgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: Vv05s0020g03900.t01 (Vitis vinifera), 5'ss of exon 2
GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtt-tggcgcagcgttttgcctgcttgatttcttctttcc----tcag-----------------------------------
|||||||||| |||||||||||||||| |||||||||||||||||   || ||||   |  | || | |  |      |||| ||   |||  |    || |                                   
GAAGAACAAGAGGATTTCCAAGGGAAAAAAGGGAGGCAAGAAGAAGGCgtgagtgcaatatcacaacttaatcaaattttgaattggccttatcaacttctgttgcttgatttttcatcctgatataatcaatgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: Vv14s0030g01810.t01 (Vitis vinifera), 5'ss of exon 2
GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtt-tggcgcagcgttttgcctgct-tgatttcttctttcctcag----------------------------------------------------------------------------------------------
||| |||||| ||||||||||||| || |||||||| ||||||||   || |||         |         |  | | ||||||    | || | |                                                                                               
GAAAAACAAGAGGATTTCCAAGGGGAAAAAGGGAGGAAAGAAGAAGGCgtgagttccacaaacctaaaaacaacgagttctgattttcattgtcttgaattgacgtttcaaatctgttatcgtgttttgttttgtttgttttttttttttggtggttatttggatttcatcggatttgatatttttgctgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: EDP08964 (Chlamydomonas reinhardtii), 5'ss of exon 1
----------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttcctcag----------------------
                                         ||||||||||| ||   |||||| ||||||||||||||||||||   ||||||    ||| || |  |  ||| ||  ||   |  | |  ||||                       
CAGCCGTTTGTTGACTACCGGTAGCAACCATGGCTGTCGGCAAGAACAAGCGCATCAGCAAGGGGAAGAAGGGAGGCAAGAAGAAGGCgtaagt---cggc-catctctgcgcccgc--gacccccacctcgctcacctggctcgttttctgcgcgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttg--gcgcagcgttttgcctgcttgatttcttctttcctcag------------------------------------------------------------------
                                                     |||||||||||||||||||||||||||||||| |||||||||||||||||    ||     |   ||  |       ||  | | |  |  |  |  |                                                                  
CCCTGCCTCCCACTGCTGCCGCTGCTCCGTCCTCCGCAACAATGGCGGTCGGCAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAAATgtacaccttccctaccttgccctccattacctccagtgccgcacttgtaggtttgtgttgcttccaaatgttccttgagcatttggtctaacatggagatgtttgagtcttgtgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S46_147V6.1 (Physcomitrella patens), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttg---gcgcagcgttttgcctgcttgatttcttctttcctcag------------------------------------------------------------------------------------------------------------------------
                                                    |||||||||||| ||||||||||| ||||||||||||||||||||||||||            | | ||| | ||  | | ||  ||| |  || |   |                                                                                                                        
GCTTCTGCTGCTGCTGTTGCTGGAATTCCTCTTTGGCAGCCATGGCCGTGGGGAAGAACAAGCGCATTTCCAAGGGGAAGAAGGGAGGCAAGAAGAAAATgtactctcccacactctctgcgctctgtattcgtgtcttcatgcttgcattgtgtctcccgcgagctctcgttccgtggcctttaggtgtggagctttttatgtgccctggtggaatgtgctgtggctcacatgagttctgattagagtggcggtggttttttgcattgtag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S219_50V6.1 (Physcomitrella patens), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttcctcag------------------------------------------------------------------------------------------------------------------------
                                                     ||||||||||| ||||||||||| ||||||||||||||||||||||||||  | |||    |||   ||| |     ||| |||     ||| | |                                                                                                                        
TTCAGCTCGCACGGAGCTTGTTTGCTGCTTCGACAGCAGCCATGGCCGTCGGCAAGAACAAGCGTATTTCCAAGGGGAAGAAGGGAGGCAAGAAGAAAATgtacttctttc---cagtacttttctactgtgaattcacggctccactgcgtctgccaagtgtttgtgtactagctgtcttgagtgatggtttggtttctagggtttagtgtgcttgtgtggtatatgcggaggttctaactagagcgacgatgatttttgcactgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S17_306V6.1 (Physcomitrella patens), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaa------gtgtttggcgcagcgttttgc--ctgcttgatttcttctttcctcag----------------------------------------------------
                                                    ||||||||||||||| |||||||| |||||||| ||||||||||||||||||       ||  || |  |||  ||| |  | |    || | |  |||| |                                                       
CCCTGCTCATCATCATATCTCTTGCTACTCTGTCTGCAGCCATGGCTGTCGGGAAGAACAAGCGGATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtaacgtccgctggctgtctgagctctttacgacagtcgaatgtgtaatttcatttttgtgagttattgagggtttctgctaacttgacgacgtgggagtggtgtgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S174_49V6.1 (Physcomitrella patens), 5'ss of exon 1
-----------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttcctcag------------------------------------------------------------------------------------------------------------
           |||||||||||| ||||||||||| |||||||| ||||||||||||||||| |            |  | |  || ||   | ||| | |  |||                                                                                                              
ATGGCGGTCGGGAAGAACAAGCGCATTTCCAAGGGGAAGAAGGGTGGCAAGAAGAAAATgtacgctcccataatctctctctctct-ctctctctctccctcgctcgctatctctctttctctatcccccccactcacagtggtgcgtttattagggttttgatgtgtttgtgaggatttgagatgacatggcgatatcttctgagtcctacgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S92_47V6.2 (Physcomitrella patens), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagt----gtttggcgcagcgttttg-----cctgcttgatttct-tctttcctcag--------------------------------------------
                                                    |||||||||||||||||||||||| || ||||| || |||||||||||||| ||     ||   |   ||||| ||       || | | ||| | |   |  | ||                                            
CCGTCTTGCCAGCCGCTGCTTCTGCCTCGTCCTCTGCAGCCATGGCGGTCGGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S80_120V6.1 (Physcomitrella patens), 5'ss of exon 1
-------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttcctcag------------------------------------------------------------------------------------
              ||||| || || || || |||||||||||||||||||||||||||||||| | | |   |    | || |   | |  || |   |  |||                                                                                         
CCATGGCGGTCGGCAAGAATAAACGTATCTCGAAGGGAAAGAAGGGAGGCAAGAAGAAAATgta-gcgctctccttctccttctctttacaggaatggctaattcgctgtcctgctgcgctggtttgagtttaggtttcgaggtttgtgtttgtttccacgcattgacgcggaggacggtgggatgtaatgcag

upper sequence: EFJ09763 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S80_113V6.1 (Physcomitrella patens), 5'ss of exon 1
----------------------------------------------------GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttcctcag------------------------------------------------------------------------------------
                                                     ||||| || || || || |||||||||||||||||||||||||||||||| | | |   |    | || |   | |  || |   |  |||                                                                                         
TTGCAGGGAAGCTCTCTCGTGGCCATTAGCATTGTGCAGCCATGGCGGTCGGCAAGAATAAACGTATCTCGAAGGGAAAGAAGGGAGGCAAGAAGAAAATgta-gcgctctccttctccttctctttacaggaatggctaattcgctgtcctgctgcgctggtttgagtttaggtttcgaggtttgtgtttgtttccacgcattgacgcggaggacggtgggatgtaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169056435|gb|FE467014.1|FE467014
EST:     GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT                         TGTCGACCCTTTCTCCAAGAAGGATTGGTACGATGTCAAGGCCATGTCCAC
genomic: GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgttt ... ctttcctcagTGTCGACCCTTTCTCCAAGAAGGATTGGTACGATGTCAAGGCCATGTCCAC




















RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 33

GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgttt ... ctttcctcagTGTCGACCCTTTCTCCAAGAAGGATTGGTACGATGTCAAGGCCATGTCCACTTTCAATGTTCGTCAGATCGGGAAGACGCTTGTGACGAGAACGCAGGGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATgtaagtgtttggcgcagcgttttgcctgcttgatttcttctttcctcag

 AAGAAC
- - - - - - - - - - - - AAAGAA
- - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - AAGAAA