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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTGGAAGAGAGAAATGAATTGGCTTGTCTCTGTGACAGACTACATTGTTGAGCTCGTTCCAACCTGGCAAACATTCCCAGACGGAAGCAGCGTTGAGgtgagtaacaagtctccgtgcgacttccgttacctaagattgattgtcatcttattcgtctcag

Basic information

species Selaginella moellendorffii
transcript EFJ09188
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ09188 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: AT1G01700.1 (Arabidopsis thaliana), 5'ss of exon 3
AATGTGGAAGAGAGAAATGAATTGGCTTGTCTCTGTGACAGACTACATTGTTGAGCTCGTTCCAACCTGGCAAACATTCCCAGACGGAAGCAGCGTTGAGgtgagtaacaagtctccgtgcgacttccgttacctaagattgattgtcatcttattcgtctcag--------------------------
 | ||||||||||||||||||||| ||| ||||||||   ||||| ||| | ||| |  | ||||  |  || |   |     | |||  ||  |||||||| |  || |  |     |  ||  |  ||  || || | |||     |  | | | || | |                           
GACGTGGAAGAGAGAAATGAATTGCCTTCTCTCTGTGTGTGACTATATTTTCGAGTTTATCCCAAAGTCACAGAATCTAAGCAATGGAGCCACTGTTGAGgtaaacaagatttgcttata-gatataagt--ccaaaaactgaaataaacatcaatagtttaaaaatagctgttgcggtttttttgtcag