1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCATGGAGACCATGCTTCTCACAAGAAGGTGATCGATCTCGTCAAGGAGTATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAGgtgggaagatcatgtttttattttctggtgttcatggtttctcttttttgcttcttttcag
species | Selaginella moellendorffii |
transcript | EFJ08413 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAG GGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAAEST: gi|169077540|gb|FE485972.1|FE485972
genomic: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAGgtgggaagat ... ttcttttcagGGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAA
EST: ATAACGCGCAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAG GGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAAEST: gi|169079825|gb|FE491234.1|FE491234
genomic: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAGgtgggaagat ... ttcttttcagGGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAA
EST: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAG GGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAAEST: gi|169079174|gb|FE488659.1|FE488659
genomic: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAGgtgggaagat ... ttcttttcagGGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAA
EST: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAG GGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAAEST: gi|169027571|gb|FE432745.1|FE432745
genomic: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAGgtgggaagat ... ttcttttcagGGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAA
EST: ATAACGCGCAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAG GGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATNCA-GCTAGAAAAEST: gi|169031817|gb|FE440621.1|FE440621
genomic: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAGgtgggaagat ... ttcttttcagGGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAAT-CAAGCTAGAAAA
EST: ATAACGCGCAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAG GGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAAEST: gi|169022943|gb|FE428657.1|FE428657
genomic: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAGgtgggaagat ... ttcttttcagGGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAA
EST: ATAACGCGCAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAG GGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAAEST: gi|169082511|gb|FE489034.1|FE489034
genomic: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAGgtgggaagat ... ttcttttcagGGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAA
EST: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAG GGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAA
genomic: ATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAGgtgggaagat ... ttcttttcagGGACCGGAAGTAAGGAGCGGAGATCTTCCTCAACCAATCAAGCTAGAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGGAGACCATGCTTCTCACAAGAAGGTGATCGATCTCGTCAAGGAGTATAACGCGAAATCCGCTGATAATGTGATCGCTATCATGCTGGATACCAAGgtgggaagatcatgtttttattttctggtgttcatggtttctcttttttgcttcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA