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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCTCAAGATCGGGAGGAAAACATCGCGGGTGCTCGTCACCGGTGGAGACGATCACAAGGTCAATATGTGGGCGATCGGCAAGCCCAACGCGATTCTGgtgagcacagcttttgataaagctaggaaagcatgcttaggggcattctaggcatggctgggagagtatctatttctccacagttttttcaagtgtggtttggaaccttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ05569
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ05569 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 2
TTGCCTCAAGATCGGGAGGAAAACATCGCGGGTGCTCGTCACCGGTGGAGACGATCACAAGGTCAATATGTGGGCGATCGGCAAGCCCAACGCGATTCTGgtgagcacagcttttgataaagctaggaaagcatgcttaggggcattctaggc-atggctgggagagtatctatttctccacagttttttcaagtgtggtttggaaccttgcag
 ||||||||||| |||||||| || || ||||| || |||||||| ||||| ||||| ||||||||| | ||||| || || ||||||||  | |||||||| || ||   ||| | ||  |||  |     |||  | | |  ||| ||  |  |||||    |  |   ||      || |    |||   |     |||| |         
CTGCCTCAAGATTGGGAGGAAGACCTCACGGGTTCTTGTCACCGGAGGAGAGGATCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATTCTGgtaag-acttatttggctagtgct--gtttctatgtatggagtgattgtaaactgtggctccatggttgagtaggaaaacagaacccttt---gctgactttgaag--------

upper sequence: EFJ05569 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GRMZM2G160702_T01 (Zea mays), 5'ss of exon 2
TTGCCTCAAGATCGGGAGGAAAACATCGCGGGTGCTCGTCACCGGTGGAGACGATCACAAGGTCAATATGTGGGCGATCGGCAAGCCCAACGCGATTCTGgtgagcacagcttttgataaagctaggaaagcatgcttaggggcattctaggc-atggctgggagagtatctatttctccacagttttttcaagtgtggtttggaaccttgcag
 ||||||||||| |||||||| || |||||||| || ||||| || ||||| || || ||||||||| | ||||| || || ||||||||  | || ||||| || || | ||||     || |  |     | |  | |    ||| ||  |   ||||       |   ||      || |  | ||   |      ||   ||        
CTGCCTCAAGATTGGGAGGAAGACCTCGCGGGTTCTTGTCACAGGAGGAGAGGACCATAAGGTCAATCTTTGGGCTATTGGGAAGCCCAATTCAATACTGgtaag-actgtttttct---agttctgtttctacgtatggactgattgtaaactgcggctccacagttgggtaggaaaacaaaactctt---aactcacttgaaaaa-------

upper sequence: EFJ05569 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 5'ss of exon 2
TTGCCTCAAGATCGGGAGGAAAACATCGCGGGTGCTCGTCACCGGTGGAGACGATCACAAGGTCAATATGTGGGCGATCGGCAAGCCCAACGCGATTCTGgtgagcacagctt--ttgataaagctaggaaagcatgcttaggggcattctaggcatggctgggagagtatctatttctccacagttttttcaagtgtggtttggaaccttgcag
 || |||||||| ||||||||  ||||  |||| || |||||||||||||| ||||||||||| ||| | ||||| |||||||||||||| || || ||||| |  ||  |||  |   |    ||     |   || ||     | || | |  ||   | |    | |||   |        |  |||  |  | ||||    |         
CTGTCTCAAGATTGGGAGGAAGTCATCCAGGGTTCTTGTCACCGGTGGAGAAGATCACAAGGTGAATCTTTGGGCCATCGGCAAGCCCAATGCCATACTGgtaactacttcttactctctctttctcttctattctgatttccccctttttcgtaatccatcgtttcgcatcggctg------ggaatttcaatatttggtggata---------

upper sequence: EFJ05569 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S101_210V6.1 (Physcomitrella patens), 5'ss of exon 2
TTGCCTCAAGATCGGGAGGAAAACATCGCGGGTGCTCGTCACCGGTGGAGACGATCACAAGGTCAATATGTGGGCGATCGGCAAGCCCAACGCGATTCTGgtgagcacagcttttgataaagctaggaaagcatgcttaggggcattctaggcatggctgggagagtatctatttctccacagttttttcaagtgtggtttggaaccttgcag
 ||||||||||| |||| |||  | ||  ||||  | |||||||| ||||| |||||||| ||||| |||||||| || || ||||||||||| ||  ||||  |     | | |||  |  | | ||||| |    ||      |  |     | ||||       || | |||   |   ||  ||      ||    ||   ||||  ||
CTGCCTCAAGATTGGGAAGAAGTCCTCTAGGGTCTTGGTCACCGGCGGAGAGGATCACAAAGTCAACATGTGGGCTATTGGGAAGCCCAACGCTATATTGgtatgttggccatgtga--accccaagaaaggagaaataac----tctttactttcgctg------catttcttttctcgtcgtcgttagctccgtatcgtgtctcctt-tag