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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGTCACCGTGAGCAGCAATCTCCCTTGGATGTTCTTCCCGGATATTGTACCAATCGGTCACCCAGTGTTTGATGTTATCAACTCGACTGATCCCGAGgtgagtgccagggagttacacggtctctgtggactgagagttttttcattccag

Basic information

species Selaginella moellendorffii
transcript EFJ04899
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ04899 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: AT4G20130.1 (Arabidopsis thaliana), 5'ss of exon 4
ACTTGTCACCGTGAGCAGCAATCTCCCTTGGATGTTCTTCCCGGATATTGTACCAATCGGTCACCCAGTGTTTGATGTTATCAACTCGACTGATCCCGAGgtg--agtgccagggagttaca-cggtctctgtggactgagagttttt-tcattccag--------------------------
  |  | ||| | ||    || | |||||||||||| ||||| |||||||||||||| ||||| ||  | || ||| | || |||||||||||||| |||||   |   |    | | ||   || | ||        || |||| || || |||                             
GATGATAACCATTAGACAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGgtagtaacacatttgtgctatttcgatatcatcaactcgaaagttcttatctttctcaaagtcctttcacatttgtgcttacag