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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTGTGCAGCGGTGTTGTGCCTTGCTGCTGGAGATGCCAAGTGTCTATCAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCGgtaagaacttttgctctttctgtttaatctttaaccgaaacttttatag

Basic information

species Selaginella moellendorffii
transcript EFJ33911
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169083462|gb|FE495861.1|FE495861
EST:     CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCG                         CATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
genomic: CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCGgtaagaactt ... acttttatagCATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
EST: gi|169027167|gb|FE435064.1|FE435064
EST:     CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCG                         CATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
genomic: CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCGgtaagaactt ... acttttatagCATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
EST: gi|169051503|gb|FE459738.1|FE459738
EST:     CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCG                         CATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
genomic: CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCGgtaagaactt ... acttttatagCATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
EST: gi|169027308|gb|FE436167.1|FE436167
EST:     CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCG                         CATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
genomic: CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCGgtaagaactt ... acttttatagCATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
EST: gi|169095774|gb|FE498894.1|FE498894
EST:     CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCG                         CATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
genomic: CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCGgtaagaactt ... acttttatagCATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
EST: gi|169021628|gb|FE428845.1|FE428845
EST:     CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCG                         CATCAGCTGCTGTCACTTTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
genomic: CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCGgtaagaactt ... acttttatagCATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
EST: gi|169087455|gb|FE492531.1|FE492531
EST:     CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCG                         CATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC
genomic: CAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCGgtaagaactt ... acttttatagCATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 37

ACAGTGTGCAGCGGTGTTGTGCCTTGCTGCTGGAGATGCCAAGTGTCTATCAACAGTCGCAATGCTTGTGAACGGTCTCAAAACTGGCGGTCATGATGCGgtaagaactt ... acttttatagCATCAGCTGCTGTCACTCTTGTGTCTGGGAGAAATCGGCAGAAGGAAAGACTTAAGCTCCGTTCCCGATATAGAATCGGTTATTATCAGATCGTTCCAAT




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