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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTTGGGACGAGAACAAGTTCACTGCCGATGGCTTGCAGTCCCTCACCAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagaccatagctctttcccataggctttgacaactaaagcacaaagcaatcgtccttttctttcag

Basic information

species Selaginella moellendorffii
transcript EFJ14095
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169025753|gb|FE433663.1|FE433663
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169052412|gb|FE462246.1|FE462246
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169094763|gb|FE492940.1|FE492940
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169110846|gb|FE509329.1|FE509329
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTG
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTG
EST: gi|169036142|gb|FE445663.1|FE445663
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169053756|gb|FE461523.1|FE461523
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169076999|gb|FE485340.1|FE485340
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169081815|gb|FE486414.1|FE486414
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169026881|gb|FE432386.1|FE432386
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169078633|gb|FE487065.1|FE487065
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169108088|gb|FE511031.1|FE511031
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169026857|gb|FE434221.1|FE434221
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169076998|gb|FE485339.1|FE485339
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169027233|gb|FE435091.1|FE435091
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169026895|gb|FE432387.1|FE432387
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169092972|gb|FE495266.1|FE495266
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169021773|gb|FE430420.1|FE430420
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
EST: gi|169077159|gb|FE484538.1|FE484538
EST:     CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAG                         TACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA
genomic: CAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 79

GTACTTTGGGACGAGAACAAGTTCACTGCCGATGGCTTGCAGTCCCTCACCAACAGCCTGTGCTACACTTACGCTCGCTGCACACGCTCAGTCTCGATAGgtaaagacca ... tttctttcagTACCACCTGCATACTACGCTCACCTGGCTGCGTTCCGCGCGAGATTCTACATGGAGCCGGACGCGTCCGAGGCTGGCTCCGTCCACCGGAACACTGCTCC




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