1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GAGAAGAGCAGATCCAGAAGAAGAGCTTCGGATCATGGCTCAAGAAGTTCGTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAGgtacgctagcaatttgtttgtgaatgctggactaaaaatcgctgcag
species | Selaginella moellendorffii |
transcript | EFJ05623 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAG GCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACGEST: gi|169082154|gb|FE487507.1|FE487507
genomic: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAGgtacgctagc ... atcgctgcagGCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACG
EST: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAG GCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACGEST: gi|169094452|gb|FE495093.1|FE495093
genomic: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAGgtacgctagc ... atcgctgcagGCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACG
EST: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAG GCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACGEST: gi|169094451|gb|FE495092.1|FE495092
genomic: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAGgtacgctagc ... atcgctgcagGCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACG
EST: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAG GCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACGEST: gi|169030487|gb|FE437872.1|FE437872
genomic: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAGgtacgctagc ... atcgctgcagGCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACG
EST: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAG GCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACGEST: gi|169059925|gb|FE467287.1|FE467287
genomic: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAGgtacgctagc ... atcgctgcagGCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACG
EST: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAG GCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACGEST: gi|169108013|gb|FE513296.1|FE513296
genomic: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAGgtacgctagc ... atcgctgcagGCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACG
EST: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAG GCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACGEST: gi|169096068|gb|FE500033.1|FE500033
genomic: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAGgtacgctagc ... atcgctgcagGCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACG
EST: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAG GCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACG
genomic: GTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAGgtacgctagc ... atcgctgcagGCAGCAATATTTTGTCAGGTCGAAAGGTCCAAGGATTCAATGCTCAGCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAGAGCAGATCCAGAAGAAGAGCTTCGGATCATGGCTCAAGAAGTTCGTGATTACGTGGAGGCAGTAATGAACAGTCTTTCAGCAAACATCCCCAAGgtacgctagcaatttgtttgtgaatgctggactaaaaatcgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG