Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTAGAGCACCTTTTGCAGTATGGCGAGCCAAATATTCGTCGAGCCGTGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctttaaaaattgtgctcatctattggattatatcagatc

Basic information

species Selaginella moellendorffii
transcript EFJ26022
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169064751|gb|FE476097.1|FE476097
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATTTCGAATCC----G-AAGA-TT                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACTGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169025374|gb|FE435988.1|FE435988
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCC----G-AAGA-TC                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169088931|gb|FE494443.1|FE494443
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCC----G-AAGA-TC                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169019957|gb|FE431022.1|FE431022
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCC----G-AAGA-TC                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169080935|gb|FE486104.1|FE486104
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCC----G-AAGA-TC                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169030421|gb|FE438677.1|FE438677
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATTTCGAATCC----G-AAGA-TT                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACTGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169116305|gb|FE517252.1|FE517252
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATTTCGAATCC----G-AAGA-TT                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACTGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169066440|gb|FE474663.1|FE474663
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATTTCGAATCC----G-AAGA-TT                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACTGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169097980|gb|FE498777.1|FE498777
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATTTCGAATCC----G-AAGA-TT                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACTGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169064752|gb|FE476098.1|FE476098
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATTTCGAATCCGAAG--A----TT                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACTGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169059060|gb|FE468205.1|FE468205
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCC----G-AAGA-TC                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169116306|gb|FE517253.1|FE517253
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATTTCGAATCC----G-AAGA-TT                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACTGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169097109|gb|FE498955.1|FE498955
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATTTCGAATCC----G-AAGA-TT                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACTGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169064768|gb|FE473735.1|FE473735
EST:     TGCCTTTGGCTCTGGGTCTCTTGTCGATTTCGAATCC----G-AAGA-TT                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACTGACTCGGAAGTC
genomic: TGCCTTTGGCTCTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
EST: gi|169025373|gb|FE435987.1|FE435987
EST:     CTGGGTCTCTTGTCGATATCGAATCC----G-AAGA-TC                         AATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC
genomic: CTGGGTCTCTTGTCGATATCGAATCCGAAGGTAAGACTTgatttttctt ... atatcagatcAATGTCATGGACACATTGAGCAGGCTGAGCCATGACACAGACTCGGAAGTC