1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GGCTGCTGATCTCTATCGGGAGCAAACGAAAGGAAGAGTTTTGGAGTGGGACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAGgtagatttttttaattcctcaatctttgatctatcgtaacgcttttatttcttgctgtgcag
species | Selaginella moellendorffii |
transcript | EFJ24089 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: ACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAG GTTGGCGGCGTGTACGTAAGATTGTTCCTGANAGATCCGAAGTTTCCTCTTEST: gi|169049430|gb|FE458289.1|FE458289
genomic: ACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAGgtagattttt ... tgctgtgcagGTTGGCGGAGTGTACGTAAGATTGTTCCTGAAAGATCCAAAGTTTCCTCTT
EST: ACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAG GTTGGCGGCGTGTACGTAAGATTGTTCCTGAAAGATCCGAAGTTTCCTCTTEST: gi|169053614|gb|FE462824.1|FE462824
genomic: ACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAGgtagattttt ... tgctgtgcagGTTGGCGGAGTGTACGTAAGATTGTTCCTGAAAGATCCAAAGTTTCCTCTT
EST: ACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAG GTTGGCGGAGTGTACGTAAGAATGTTCCCTGAA-GATCCAAAGTTTCCTCTEST: gi|169024185|gb|FE433031.1|FE433031
genomic: ACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAGgtagattttt ... tgctgtgcagGTTGGCGGAGTGTACGTAAGATTGTTCC-TGAAAGATCCAAAGTTTCCTCT
EST: ACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAG GTTGGCGGCGTGTACGTAAGATTGTTCCTGAAAGATCCGAAGTTTCCTCTTEST: gi|169108778|gb|FE513047.1|FE513047
genomic: ACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAGgtagattttt ... tgctgtgcagGTTGGCGGAGTGTACGTAAGATTGTTCCTGAAAGATCCAAAGTTTCCTCTT
EST: ACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAG GTTGGCGGAGTGTACGTAAGATTGTTCCTGANAGATCCAAAGTTTCCTCTT
genomic: ACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAGgtagattttt ... tgctgtgcagGTTGGCGGAGTGTACGTAAGATTGTTCCTGAAAGATCCAAAGTTTCCTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGCTGATCTCTATCGGGAGCAAACGAAAGGAAGAGTTTTGGAGTGGGACTTACCGGAACAACCAGCTGGTCAGCAAGATATGCGTGATGAGCCTCAGgtagatttttttaattcctcaatctttgatctatcgtaacgcttttatttcttgctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA