1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TGACTTATCTGTTGAAGTGCTACTAAAAAATGCTGATACAATTGAGAGTTTGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatccaaaactgggagtcactgagatttctcacaccctcgtgctgtttgcag
species | Selaginella moellendorffii |
transcript | EFJ08380 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169071799|gb|FE477163.1|FE477163
genomic: CGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169042900|gb|FE450512.1|FE450512
genomic: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: TGCGGGAGTATTTACACAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169076023|gb|FE481005.1|FE481005
genomic: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: TGCGGGAGTATTTACACAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169028805|gb|FE438036.1|FE438036
genomic: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: TGCGGGAGTATTTACACAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169062412|gb|FE469471.1|FE469471
genomic: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169097496|gb|FE497938.1|FE497938
genomic: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: TGCGGGAGTATTTACACAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169029747|gb|FE440993.1|FE440993
genomic: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: CATACC-TGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169083538|gb|FE491410.1|FE491410
genomic: CATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: TGCGGGAGTATTTACACAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169076626|gb|FE484733.1|FE484733
genomic: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: TGCGGGAGTATTTACACAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169071798|gb|FE477162.1|FE477162
genomic: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: GTGAGGCATACC-TGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169083947|gb|FE493587.1|FE493587
genomic: GTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: TGCGGGAGTATTTACACAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATACEST: gi|169070007|gb|FE476476.1|FE476476
genomic: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
EST: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGA GCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
genomic: TGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatcc ... ctgtttgcagGCTGATGTTGAGAAACAAGCTCCAGGTCTAATGCACGAAGCTGAGCGATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACTTATCTGTTGAAGTGCTACTAAAAAATGCTGATACAATTGAGAGTTTGCGGGAGTATTTACATAAGCGCGGCCGTGAGGCATACCTTGAAAAGAGAgtacgtatccaaaactgggagtcactgagatttctcacaccctcgtgctgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA