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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCGAGATCTCAAACCGGAAAACGTTCTAGTCCAAGCGAACGGACATTTGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggtgttttctctacaatccttttcacctcagcgttgtttccag

Basic information

species Selaginella moellendorffii
transcript EFJ07343
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169030747|gb|FE440862.1|FE440862
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169033080|gb|FE441412.1|FE441412
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169113824|gb|FE515372.1|FE515372
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGG
EST: gi|169063067|gb|FE471173.1|FE471173
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169057926|gb|FE465524.1|FE465524
EST:     TGTGTTTGACGGACTTTGATCTTTCTNTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169113823|gb|FE515371.1|FE515371
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGG
EST: gi|169052749|gb|FE461166.1|FE461166
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169115293|gb|FE517009.1|FE517009
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169046222|gb|FE456381.1|FE456381
EST:     TGTGTTTGACGGACTTTGATCTTTCTNTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169030319|gb|FE440044.1|FE440044
EST:     TGTGTTTGACGGACTTTGATCTTTCTNTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169024980|gb|FE433813.1|FE433813
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169024981|gb|FE433814.1|FE433814
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACANAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGG
EST: gi|169086883|gb|FE496145.1|FE496145
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169024987|gb|FE434639.1|FE434639
EST:     TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
EST: gi|169036319|gb|FE444696.1|FE444696
EST:     TGTGTTTGACGGACTTTGATCTTTCTNTGCTATCTACAACAAAACCACAG                         CTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG
genomic: TGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 29

CTATCGAGATCTCAAACCGGAAAACGTTCTAGTCCAAGCGAACGGACATTTGTGTTTGACGGACTTTGATCTTTCTTTGCTATCTACAACAAAACCACAGgtctggtggt ... ttgtttccagCTGATACGTCCAGTGCTTCCGTCGGGGAAAAGGAAGCCAAAGATACCGCCGCCGCCAGCGTTTGTAGCCGAGCCTTTAGCACGATCCAACTCTTTTGTGG




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