Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAAGTTCTTCCTAGTGTGCAACCGTTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAGgttctcacgttttatattagtttctttgttcttacccgtaccttacag

Basic information

species Selaginella moellendorffii
transcript EFJ32221
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169103499|gb|FE508919.1|FE508919
EST:     TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAG                         TCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
genomic: TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAGgttctcacgt ... taccttacagTCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
EST: gi|169030420|gb|FE438676.1|FE438676
EST:     TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAG                         TCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
genomic: TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAGgttctcacgt ... taccttacagTCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
EST: gi|169077179|gb|FE485065.1|FE485065
EST:     TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAG                         TCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
genomic: TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAGgttctcacgt ... taccttacagTCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
EST: gi|169074122|gb|FE481860.1|FE481860
EST:     TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAG                         TCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
genomic: TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAGgttctcacgt ... taccttacagTCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
EST: gi|169053590|gb|FE463333.1|FE463333
EST:     TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAG                         TCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
genomic: TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAGgttctcacgt ... taccttacagTCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
EST: gi|169032089|gb|FE437994.1|FE437994
EST:     TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAG                         TCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA
genomic: TTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAGgttctcacgt ... taccttacagTCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 32

ATGGAAGTTCTTCCTAGTGTGCAACCGTTTCACGCCATCGCGTATCCATTAGATCCTTTGTTGGCGTTGGAAATAAGgttctcacgt ... taccttacagTCGGAAATATGCCGAGCATTGTTCTTTGGTAGCTTCACGATTTTCGCTCCAGCCATTTGTCCATCCACCTGCCGTACGTGTTAAAGACGAAGGTGGTAGC




<











<


<