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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTTGAGACGCATAATGCGCGAGTCTCTGGATGTCCAAGCGCAGGAAGCACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattctaatgcaagttttggctatagtttgtacttatgtttctcttccaaaccag

Basic information

species Selaginella moellendorffii
transcript EFJ10924
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169079264|gb|FE490153.1|FE490153
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169023427|gb|FE431897.1|FE431897
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169094858|gb|FE491618.1|FE491618
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169052238|gb|FE463294.1|FE463294
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169093394|gb|FE492698.1|FE492698
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169098684|gb|FE498584.1|FE498584
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169088967|gb|FE492906.1|FE492906
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169042162|gb|FE454205.1|FE454205
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169021140|gb|FE431451.1|FE431451
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169106754|gb|FE504711.1|FE504711
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169088968|gb|FE492907.1|FE492907
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
EST: gi|169080477|gb|FE488454.1|FE488454
EST:     CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAG                         GACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC
genomic: CACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattc ... tccaaaccagGACAAGGTGCGAGATCATTCCACCAAGACCGGGTCCAAACAAGATTTAAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCTTGAGACGCATAATGCGCGAGTCTCTGGATGTCCAAGCGCAGGAAGCACTGGAGAAGAAAGCTGGTGGCGAGTTTGCGTGGGTGAAACCATTCCAGgtgagtattctaatgcaagttttggctatagtttgtacttatgtttctcttccaaaccag

- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG