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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAATATTTGTAGCAAGAGCTCCTGGTCGTTTGGATGTTATGGGCGGAATCGCGGATTACTCTGGCAGCCTCGTGCTACAAgtatggttaactcctgtgtcacaacaactttgaactaacatcatgcattccag

Basic information

species Selaginella moellendorffii
transcript EFJ25537
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169025659|gb|FE436572.1|FE436572
EST:     TGGATGTTATGGGCGGAATCGCGGATTACTCTGGCAGCCTCGTGCTACAA                         ATGCCGATTAGAGAAGCTTGTCACGTTGCTGTTCAAAGAAATTCTCCTGGG
genomic: TGGATGTTATGGGCGGAATCGCGGATTACTCTGGCAGCCTCGTGCTACAAgtatggttaa ... tgcattccagATGCCGATTAGAGAAGCTTGTCACGTTGCTGTTCAAAGAAATTCTCCTGGG
EST: gi|169065604|gb|FE475884.1|FE475884
EST:     TGGATGTTATGGGTGGAATCGCGGATTACTCTGGGAGCCTCGTGCTACAA                         ATGCCTATTAGAGAAGCTTGTCACGTTGCTGTTCAAAGAAATTCTTCTGCG
genomic: TGGATGTTATGGGCGGAATCGCGGATTACTCTGGCAGCCTCGTGCTACAAgtatggttaa ... tgcattccagATGCCGATTAGAGAAGCTTGTCACGTTGCTGTTCAAAGAAATTCTCCTGGG
EST: gi|169069357|gb|FE479466.1|FE479466
EST:     TGGATGTTATGGGCGGAATCGCGGATTACTCTGGCAGCCTCGTGCTACAA                         ATGCCGATTAGAGAAGCTTGTCACGTTGCTGTTCAAAGAAATTCTCCTGGG
genomic: TGGATGTTATGGGCGGAATCGCGGATTACTCTGGCAGCCTCGTGCTACAAgtatggttaa ... tgcattccagATGCCGATTAGAGAAGCTTGTCACGTTGCTGTTCAAAGAAATTCTCCTGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 14 (downstream exon)
Score: 3

GAAGAAATATTTGTAGCAAGAGCTCCTGGTCGTTTGGATGTTATGGGCGGAATCGCGGATTACTCTGGCAGCCTCGTGCTACAAgtatggttaa ... tgcattccagATGCCGATTAGAGAAGCTTGTCACGTTGCTGTTCAAAGAAATTCTCCTGGGAAGCAGCGGGTGTGGAAGCACATATCTGCCCGACAAGTTCCTGGCTGTA




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