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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCAAAAGAGTCGTGTCGCTTTTGCAAAAATCACATTCAACAAACCACACATTCTTTTACTGGATGAGCCTTCAAATCACCTTgtaagaatctgctattgtcttccaacactatcttgatattgctgtttgcatgcttatag

Basic information

species Selaginella moellendorffii
transcript EFJ11792
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ11792 (Selaginella moellendorffii), 5'ss of exon 16
lower sequence: PP1S47_97V6.1 (Physcomitrella patens), 5'ss of exon 16
GTGGGCAAAAGAGTCGTGTCGCTTTTGCAAAAATCACATTCAACAAACCACACATTCTTTTACTGGATGAGCCTTCAAATCACCTTgtaagaatctgctattgtcttccaa----cactatcttgatattgctgtttgcatgcttatag---------------------------------------
|||| ||||||||| | || ||||||||||||||||| |||||||| || || ||  |  | ||||||||||| || |||||| | ||||  || | || |   |    ||    |||    |  |  ||       ||||  || ||                                        
GTGGTCAAAAGAGTAGGGTAGCTTTTGCAAAAATCACTTTCAACAAGCCTCATATATTACTGCTGGATGAGCCATCCAATCACTTGgtaa--attttctctcagcgaataaacgtcacacgttgaacctttacaaaagcatttttgtaaagatttgcattactatttgctttgctggccactttgagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169054404|gb|FE462097.1|FE462097
EST:     CATTCAACAAACCACACATTCTTTTACTGGATGAGCCTTCAAATCACCTT                         GACCTTGACGCCGTGGAAGCACTCATACAAGGCCTAGCACTCTTTCAGGGA
genomic: CATTCAACAAACCACACATTCTTTTACTGGATGAGCCTTCAAATCACCTTgtaagaatct ... atgcttatagGACCTTGACGCCGTGGAAGCACTCATACAAGGCCTAGCACTCTTTCAGGGA
EST: gi|169101065|gb|FE500952.1|FE500952
EST:     CATTCAACAAACCACACATTCTTTTACTGGATGAGCCTTCAAATCACCTT                         GACCTTGACGCCGTGGAAGCACTCATACAAGGCCTAGCACTCTTTCAGGGA
genomic: CATTCAACAAACCACACATTCTTTTACTGGATGAGCCTTCAAATCACCTTgtaagaatct ... atgcttatagGACCTTGACGCCGTGGAAGCACTCATACAAGGCCTAGCACTCTTTCAGGGA