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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGTACCAACAATGTTTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAGgtacactacaatatgttctatgaaataacgtgctcatacttaaacgcttcag

Basic information

species Selaginella moellendorffii
transcript EFJ32660
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169053158|gb|FE463057.1|FE463057
EST:     TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAG                         TATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
genomic: TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAGgtacactaca ... aacgcttcagTATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
EST: gi|169071159|gb|FE477836.1|FE477836
EST:     TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAG                         TATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
genomic: TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAGgtacactaca ... aacgcttcagTATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
EST: gi|169111105|gb|FE514242.1|FE514242
EST:     TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAG                         TATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
genomic: TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAGgtacactaca ... aacgcttcagTATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
EST: gi|169071160|gb|FE477837.1|FE477837
EST:     TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAG                         TATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
genomic: TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAGgtacactaca ... aacgcttcagTATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
EST: gi|169111104|gb|FE514241.1|FE514241
EST:     TTCTACTTGGTGCACAGGATCGGTGAGTGCCAGTGTCAAACGGTCTCCAG                         TATGCACAAGCATTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
genomic: TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAGgtacactaca ... aacgcttcagTATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
EST: gi|169083988|gb|FE493628.1|FE493628
EST:     TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAG                         TATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
genomic: TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAGgtacactaca ... aacgcttcagTATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
EST: gi|169036112|gb|FE445659.1|FE445659
EST:     TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAG                         TATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
genomic: TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAGgtacactaca ... aacgcttcagTATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
EST: gi|169030220|gb|FE437098.1|FE437098
EST:     TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAG                         TATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC
genomic: TTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAGgtacactaca ... aacgcttcagTATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 34 (downstream exon)
Score: 9

GTTCAAGTACCAACAATGTTTCTACTTGGTGCACAGGATCGGAGAGTGCCAGTGTCAAACGGTCTCCAGgtacactaca ... aacgcttcagTATGCACAAGCACTAAGAGCTCGAGGACTGGAAGTTAAGGTTATTGTCTTCCCAGATGACATTCATGCTATCGATCG




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