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GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagacatttatatcttgtctcgtggaaaaccattgattgtttcttttgatgcag
species | Selaginella moellendorffii |
transcript | EFJ30330 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAGCATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169094896|gb|FE491630.1|FE491630
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAGCATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169105223|gb|FE504895.1|FE504895
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAGCATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169034854|gb|FE444043.1|FE444043
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169075917|gb|FE482836.1|FE482836
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAGCATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169058960|gb|FE467728.1|FE467728
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAGCATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169116508|gb|FE517533.1|FE517533
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAGCATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169055454|gb|FE465852.1|FE465852
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169074665|gb|FE480895.1|FE480895
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAGCATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169026425|gb|FE435778.1|FE435778
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169083647|gb|FE495380.1|FE495380
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAGCATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169038845|gb|FE446988.1|FE446988
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AAGTATACCCAG GCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169067637|gb|FE475314.1|FE475314
genomic: AAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169047686|gb|FE454854.1|FE454854
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAGCATTATGATCCGAACTTTATTTCAATCCGAEST: gi|169045568|gb|FE452529.1|FE452529
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
EST: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAG GCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
genomic: AGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagaca ... tttgatgcagGCATTGGAGGGATTCTATGAACATTATGATCCGAACTTTATTTCAATCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCTGTCAACTGGCTGATATCTTATTCGAAGTATACCCAGgtgagagacatttatatcttgtctcgtggaaaaccattgattgtttcttttgatgcag
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