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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTTACCCTCCAACATTACGGGCAGTACCAATGTTAATAGCGTGGTAACTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaagaaaagtttcttgttttcttttgtataatggatggattcttttctgttaag

Basic information

species Selaginella moellendorffii
transcript EFJ22660
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169022260|gb|FE431219.1|FE431219
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169029631|gb|FE437302.1|FE437302
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169031502|gb|FE438967.1|FE438967
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169104812|gb|FE508709.1|FE508709
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169064481|gb|FE472564.1|FE472564
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169079022|gb|FE488585.1|FE488585
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169115579|gb|FE517789.1|FE517789
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169064482|gb|FE472565.1|FE472565
EST:     CGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGCAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169055154|gb|FE461041.1|FE461041
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169115578|gb|FE517788.1|FE517788
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169071666|gb|FE477095.1|FE477095
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
EST: gi|169054490|gb|FE462158.1|FE462158
EST:     CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAG                         GCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA
genomic: CTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 87

ACTCTTACCCTCCAACATTACGGGCAGTACCAATGTTAATAGCGTGGTAACTTCGGCAATTCGTTCTTCAGACACAAACGATCCATCCATCATCGTAAAGgtgagcaaaa ... ttctgttaagGCCGTGAACTTTGGAAACAAAGCAGTGGGGCTTAAGCTCAACATTGATGGATCATTCTGGAATTCCGCAAACTCCACTGCTGTGATTCTCACGTCAAACA




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