1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TTTTGCTCGCGGGCTGAATGTTTCACTGTCGACGGATGACCCTCTACAGATCCATCTTACTAAGGAACCTTTGGTTGAAGAATACAGTATTGCAGCTCAGgttttactggtttttgttcttttgattgtaataactcagctaaccagtaccatctcgcag
species | Selaginella moellendorffii |
transcript | EFJ17267 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TCCATCTTACTAAGGAACCTTTGGTTGAAGAATACAGTATTGCAGCTCAG GTTTGGAAGCTTAGCTCTTGTGATATATGTGAGATAGCTCGGAATTCGGTTEST: gi|169066740|gb|FE473299.1|FE473299
genomic: TCCATCTTACTAAGGAACCTTTGGTTGAAGAATACAGTATTGCAGCTCAGgttttactgg ... catctcgcagGTTTGGAAGCTTAGCTCTTGTGATATATGTGAGATAGCTCGGAATTCGGTT
EST: TCCATCTTACTAAGGAACCTTTGGTTGAAGAATACAGTATTGCAGCTCAG GTTTGGAAGCTTAGCTCTTGTGATATATGTGAGATAGCTCGGAATTCGGTTEST: gi|169074137|gb|FE482382.1|FE482382
genomic: TCCATCTTACTAAGGAACCTTTGGTTGAAGAATACAGTATTGCAGCTCAGgttttactgg ... catctcgcagGTTTGGAAGCTTAGCTCTTGTGATATATGTGAGATAGCTCGGAATTCGGTT
EST: TCCATCTTACTAAGGAACCTTTGGTTGAAGAATACAGTATTGCAGCTCAG GTTTGGAAGCTTAGCTCTTGTGATATATGTGAGATAGCTCGGAATTCGGTTEST: gi|169074136|gb|FE482381.1|FE482381
genomic: TCCATCTTACTAAGGAACCTTTGGTTGAAGAATACAGTATTGCAGCTCAGgttttactgg ... catctcgcagGTTTGGAAGCTTAGCTCTTGTGATATATGTGAGATAGCTCGGAATTCGGTT
EST: TCCATCTTACTAAGGAACCTTTGGTTGAAGAATACAGTATTGCAGCTCAG GTTTGGAAGCTTAGCTCTTGTGATATATGTGAGATAGCTCGGAATTCGGTT
genomic: TCCATCTTACTAAGGAACCTTTGGTTGAAGAATACAGTATTGCAGCTCAGgttttactgg ... catctcgcagGTTTGGAAGCTTAGCTCTTGTGATATATGTGAGATAGCTCGGAATTCGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGCTCGCGGGCTGAATGTTTCACTGTCGACGGATGACCCTCTACAGATCCATCTTACTAAGGAACCTTTGGTTGAAGAATACAGTATTGCAGCTCAGgttttactggtttttgttcttttgattgtaataactcagctaaccagtaccatctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA