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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTAGTGTGCGCTCAAGCTCACAGACAAGAGTTGATCCAAGATCTGTATAAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcggtgagtttttgttttacttattgtgctaacatacgcaaactttag

Basic information

species Selaginella moellendorffii
transcript EFJ14095
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169025753|gb|FE433663.1|FE433663
EST:     AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAG                         AGAGC-TTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
genomic: AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
EST: gi|169110846|gb|FE509329.1|FE509329
EST:     AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAG                         AGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
genomic: AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
EST: gi|169053756|gb|FE461523.1|FE461523
EST:     CAGAAGGGAACCATG-ATGGGCGGTATGATAAG                         AGAGCTTTTGATTTCCTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
genomic: CAGAAGGGAACCATGAAT-GGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
EST: gi|169108089|gb|FE511032.1|FE511032
EST:     AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAG                         AGAGCTTTTGATTTCCTTCCGAAGTGCCTCTGGATACAAACCT
genomic: AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCT
EST: gi|169081815|gb|FE486414.1|FE486414
EST:     AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAG                         AGAGCTTTTGATTTCCTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
genomic: AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
EST: gi|169026881|gb|FE432386.1|FE432386
EST:     AACATGGGTTGATCCTCAGAAAGGGAACCATGAATGGCGGTA-GATTAAG                         AGAGCTTTTAATTTCTTTCGGAAGTGCCTCTGGATACAAACCTGGAAGAA
genomic: AACATGGGTTGATCCTCAG-AAGGGAACCATGAATGGCGGTATGA-TAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAA
EST: gi|169078633|gb|FE487065.1|FE487065
EST:     AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAG                         AGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
genomic: AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
EST: gi|169108088|gb|FE511031.1|FE511031
EST:     AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAG                         AGAGCTTTTGATTTCCTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
genomic: AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
EST: gi|169026895|gb|FE432387.1|FE432387
EST:     AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAG                         AGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
genomic: AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
EST: gi|169021773|gb|FE430420.1|FE430420
EST:     AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAG                         AGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
genomic: AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
EST: gi|169077159|gb|FE484538.1|FE484538
EST:     AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAG                         AGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT
genomic: AAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 23

GTCTAGTGTGCGCTCAAGCTCACAGACAAGAGTTGATCCAAGATCTGTATAAAACATGGGTTGATCCTCAGAAGGGAACCATGAATGGCGGTATGATAAGgttagtagcg ... caaactttagAGAGCTTTTAATTTCTTTCCGAAGTGCCTCTGGATACAAACCTGGAAGAATCATCTTCTACAGAGATGGTGTGAGCGAAGGACAGTTCTACCAAGTTCTC




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