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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGGATTCAGACGCAGAAGGGACTGCCAGCGAGTTTTTTGATTATTTCAAGgtgagtgagagcatggaaatacaaacagtcgaacggtttttacgtgtttgtccttccag

Basic information

species Selaginella moellendorffii
transcript EFJ06373
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ06373 (Selaginella moellendorffii), 5'ss of exon 15
lower sequence: PP1S113_110V6.1 (Physcomitrella patens), 5'ss of exon 13
GTGATGGATTCAGACGCAGAAGGGACTGCCAGCGAGTTTTTTGATTATTTCAAGgtgagtg---agagcatggaaatacaaacagtcgaacggtttttacgtgtttgtccttccag-----------------------------------------------------------
|| ||||||||||| |||||||| ||||| |||||||| | ||| || ||||||||  | |   |     |||||||  | | ||  | | |   |||  ||| || |  | |                                                              
GTAATGGATTCAGATGCAGAAGGCACTGCAAGCGAGTTCTATGACTACTTCAAGgtacgcgcctactttctggaaat-tatatagctgga-gtcatttctgtgattcttgtacttaatttcctcgcccctatatcctctctcactttttcaaactatgctgcgttggttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169034965|gb|FE445866.1|FE445866
EST:     TGGATTCAGACGCAGAAGGGACTGCCAGCGAGTTTTTTGATTATTTCAAG                         GTGTTGTGTATCCAGGGCTTCCTTACGTGTCGGAAGCACGCAGAACGGATA
genomic: TGGATTCAGACGCAGAAGGGACTGCCAGCGAGTTTTTTGATTATTTCAAGgtgagtgaga ... gtccttccagGTGTTGTGTATCCAGGGCTTCCTTACGTGTCGGAAGCACGCAGAACGGATA