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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgccagttttttttcagtgttgactgggacactgttgtttgttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ30330
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30330 (Selaginella moellendorffii), 5'ss of exon 14
lower sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 13
------TAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgccagttttttttcagtgttgactgggacactgttgtttgttgcag--------------------------------------------------------------
       || | ||| |||||  | ||||| || || || |||||||||||||| ||||| ||||||||||||||  | || || ||  ||||||| |||| |||     |   ||||  ||  || || | |      |  | ||| |  ||  | |||                                                              
TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggct---gccaaattactt-caatatacttcagtcctctgatcattagtccagcctgatttacagcgtttgttgtttcaatatattaaatcatatgctgctctttttttttgcag

upper sequence: EFJ30330 (Selaginella moellendorffii), 5'ss of exon 14
lower sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 13
------TAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAG-Cgtctttgtgccagttt--tttttcagtgt-----tgactgggacactgttgtttgttgcag---------------------------------------------
       || ||||| |||||  | ||||| || ||||| |||||||| ||||| ||||| ||||||||||||||  | || || ||  ||||||| |||| ||| || ||       | ||   |  ||||||       | | |||  ||   |  |||   |                                                
TCCAGACAGGACTGGCAGTGTCACAATTGTTGGAGCCGTCTCTCCTCCAGGTGGTGATTTTTCAGACCCTGTTACCTCTGCAACCCTCAGTATTGTTCAGgtaagacggctgccaattacttcaatacttcagtcccccaatcattggtccatcctgatttacagtgtttgttgtttcaatatattgttaaatcatgtgctgcttttttgcag

upper sequence: EFJ30330 (Selaginella moellendorffii), 5'ss of exon 14
lower sequence: PP1S8_312V6.1 (Physcomitrella patens), 5'ss of exon 14
------TAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAG-------Cgtctttgtgccagttttttttcagt-----gttgactgggacactgtt-gtttgttgcag--------------------------------------------------------------------------------------
        | || ||||||||| |||||||||| || |||||||||||||| || |||||||| |||||||| ||  |||| || ||||||||||| ||||  ||        ||  |||  |   || |  | ||       ||  | |     | |  | | |    | ||                                                                                      
CCCAAACCGTACAGGAAGTGTTACTATTGTCGGAGCAGTGTCTCCTCCTGGAGGAGATTTCTCGGACCCTGTCACAGCAGCTACGCTTGGTATTGTTCAGgttagtcatttgtgtacttgcactgattgtgctacatcctatcgtcaatttcagaattactcgctcaccgtagatttattgagatagcaaagcattgatcctgaatgcattttttatgtggttacttgaaaaatggatgttaaatgcatgtggagtcag

upper sequence: EFJ30330 (Selaginella moellendorffii), 5'ss of exon 14
lower sequence: PP1S10_201V6.1 (Physcomitrella patens), 5'ss of exon 14
------TAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgccagttttttttcagtgttgactgggacactgttgtttgttgcag------------------------------------------------------------------------------------
      | | |||||||||||| | ||||| || || ||||| ||||||||||| ||||| ||||||||||| ||  |||| || ||||||||||| ||||   |  |  |||| ||   | |  | |||||           ||      || |   ||                                                                                    
CCCGAATCGTACTGGAAGTGTTACCATTGTTGGAGCAGTGTCCCCTCCTGGTGGAGATTTTTCAGACCCTGTCACAGCAGCTACCCTTGGTATTGTTCAGgttggtat--ttgtacctcctctcatccagtgcaccacattctaccagatattctctaagccaaagcccatgagaagttggctatgatgttgcatgtcttccaagcgaaggaactaaagcatattgtaaatgcatgttgattag

upper sequence: EFJ30330 (Selaginella moellendorffii), 5'ss of exon 14
lower sequence: PP1S44_102V6.1 (Physcomitrella patens), 5'ss of exon 14
------TAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtct-----------ttgtgccagttttttttcagtg-ttgactgggacact--gttgtttgttgcag----------------------------------------
        | ||||| |||||| | ||||| || || || || ||||||||||| || |||||||||||||| ||  |||| ||||||||||| || ||||   |  | |           |||||    | | |  | | |  ||   ||||| |    ||| | | ||  |                                         
CCCGAACCGGACTGGTAGTGTTACCATTGTTGGAGCTGTTTCACCTCCTGGTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtatttacttcagaatgttgtgttcttctctagttaataattatatgggaaagcaagttatctttttaattatacttcaacagtaaggactaaaatacgtggggattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169098593|gb|FE497219.1|FE497219
EST:     ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGG-----                         -TGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169116507|gb|FE517532.1|FE517532
EST:     ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169094896|gb|FE491630.1|FE491630
EST:     ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169034854|gb|FE444043.1|FE444043
EST:     ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGG-----                         -TGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169075917|gb|FE482836.1|FE482836
EST:     ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169058960|gb|FE467728.1|FE467728
EST:     ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169116508|gb|FE517533.1|FE517533
EST:     ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169055454|gb|FE465852.1|FE465852
EST:     ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169074665|gb|FE480895.1|FE480895
EST:     ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169026425|gb|FE435778.1|FE435778
EST:     ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169083647|gb|FE495380.1|FE495380
EST:     ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169067637|gb|FE475314.1|FE475314
EST:     ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169045568|gb|FE452529.1|FE452529
EST:     ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169026426|gb|FE435779.1|FE435779
EST:     ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGG-----                         -TGTTTTGGGGACTTGACAAGAAGCTTGCG
genomic: ATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCG