Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAAGTTTGTATGCTTGTGTTGGCGAAAGTACTCACGCATACCAAAGCCCTTCGAAAGATCTTACTGCAATTAACTGTCGCTTAAATTCGTCAAACGGgttagttgttcacaaggttcacaccatctggtttttaattgtatttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ23894
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ23894 (Selaginella moellendorffii), 5'ss of exon 14
lower sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 17
---------CAAAAAGTTTGTATGCTTGTGTTGGCGAAAGTACTCACGCATACCAAAGCCCTTCGAAAGATCTTACTGCAATTAACTGTCGCTTAAATTCGTCAAACGGgttagttgt--tcacaaggttcacaccatct-ggtttttaattgtatttgcag------------------------------------
         | |||||||  |||||||||||||| || |||||||| || || || |||||||| ||||| || ||||| |||||    || || |||  ||        ||  ||||  |   ||  |    |  ||   ||   |   || | | |||                                      
CACATAGTTCTAAAAGTTACTATGCTTGTGTTGGAGAGAGTACTCATGCTTATCAGAGCCCTTCAAAAGACCTAACTGCCATTAATAACCGATTGAATAGgtatgcgtatttccttgtattattaacctctgaaatatgaaggaactctcttatttgtgctaaattactcacttgtttgttatgtttgcctctcacag