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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGTCCAGGCAAGCgtctttgtgccagttgtttttcagtgttgactgggacactgttgtttgttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ33015
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ33015 (Selaginella moellendorffii), 5'ss of exon 13
lower sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 13
------CAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGTCCAGGCAAGCgtctttgtgccagttgtttttcagtgttgactgggacactgttgtttgttgcag--------------------------------------------------------------
      ||| | ||| |||||  | ||||| || || || |||||||||||||| ||||| ||||||||||||||  | || || || | |||||| |||| |||     |   ||||  | |  |||| | |      |  | ||| |  ||  | |||                                                              
TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggct---gccaaat-tacttcaatatacttcagtcctctgatcattagtccagcctgatttacagcgtttgttgtttcaatatattaaatcatatgctgctctttttttttgcag

upper sequence: EFJ33015 (Selaginella moellendorffii), 5'ss of exon 13
lower sequence: GRMZM2G128877_T02 (Zea mays), 5'ss of exon 13
------CAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGTCCAGGCAAG-Cgtctttgtgccagtt--gtttttcagtgt-----tgactgggacactgttgtttgttgcag---------------------------------------------
      ||| ||||| |||||  | ||||| || ||||| |||||||| ||||| ||||| ||||||||||||||  | || || || | |||||| |||| ||| || ||       | ||   |  ||||||       | | |||  ||   |  |||   |                                                
TCCAGACAGGACTGGCAGTGTCACAATTGTTGGAGCCGTCTCTCCTCCAGGTGGTGATTTTTCAGACCCTGTTACCTCTGCAACCCTCAGTATTGTTCAGgtaagacggctgccaattacttcaatacttcagtcccccaatcattggtccatcctgatttacagtgtttgttgtttcaatatattgttaaatcatgtgctgcttttttgcag

upper sequence: EFJ33015 (Selaginella moellendorffii), 5'ss of exon 13
lower sequence: PP1S8_312V6.1 (Physcomitrella patens), 5'ss of exon 14
------CAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGTCCAGGCAAG-------Cgtctttgtgccagttgtttttcagt-----gttgactgggacactgtt-gtttgttgcag--------------------------------------------------------------------------------------
      | | || ||||||||| |||||||||| || |||||||||||||| || |||||||| |||||||| || ||||| || |||  |||||| ||||  ||        ||  |||  |   ||||  | ||       ||  | |     | |  | | |    | ||                                                                                      
CCCAAACCGTACAGGAAGTGTTACTATTGTCGGAGCAGTGTCTCCTCCTGGAGGAGATTTCTCGGACCCTGTCACAGCAGCTACGCTTGGTATTGTTCAGgttagtcatttgtgtacttgcactgattgtgctacatcctatcgtcaatttcagaattactcgctcaccgtagatttattgagatagcaaagcattgatcctgaatgcattttttatgtggttacttgaaaaatggatgttaaatgcatgtggagtcag

upper sequence: EFJ33015 (Selaginella moellendorffii), 5'ss of exon 13
lower sequence: PP1S10_201V6.1 (Physcomitrella patens), 5'ss of exon 14
------CAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGTCCAGGCAAGCgtctttgtgccagttgtttttcagtgttgactgggacactgttgtttgttgcag------------------------------------------------------------------------------------
        | |||||||||||| | ||||| || || ||||| ||||||||||| ||||| ||||||||||| || ||||| || |||  |||||| ||||   |  |  |||| ||   | |  | |||||           ||      || |   ||                                                                                    
CCCGAATCGTACTGGAAGTGTTACCATTGTTGGAGCAGTGTCCCCTCCTGGTGGAGATTTTTCAGACCCTGTCACAGCAGCTACCCTTGGTATTGTTCAGgttggtat--ttgtacctcctctcatccagtgcaccacattctaccagatattctctaagccaaagcccatgagaagttggctatgatgttgcatgtcttccaagcgaaggaactaaagcatattgtaaatgcatgttgattag

upper sequence: EFJ33015 (Selaginella moellendorffii), 5'ss of exon 13
lower sequence: PP1S44_102V6.1 (Physcomitrella patens), 5'ss of exon 14
------CAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGTCCAGGCAAGCgtcttt------gtgcca-gttgtttttcagt-----gttgactgggacact--gttgtttgttgcag----------------------------------------
      | | ||||| |||||| | ||||| || || || || ||||||||||| || |||||||||||||| || ||||| ||||||  ||| || ||||   |  | |         ||    ||| || |  |||      ||   ||||| |    ||| | | ||  |                                         
CCCGAACCGGACTGGTAGTGTTACCATTGTTGGAGCTGTTTCACCTCCTGGTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtatttacttcagaatgttgtgttcttctctagttaataattatatgggaaagcaagttatctttttaattatacttcaacagtaaggactaaaatacgtggggattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169105224|gb|FE504896.1|FE504896
EST:     ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGTCCAGG-----                         -TGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
EST: gi|169080595|gb|FE490951.1|FE490951
EST:     ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGT-C---C-AG-                         GTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT
genomic: ATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGTCCAGGCAAGCgtctttgtgc ... tttgttgcagGTGTTTTGGGGACTTGACAAGAAGCTTGCGCAAAGAAAGCATTTCCCTGCT