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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCAAGCACAAGAATGGACGCTATGGAGTGGCCGGAATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCATgtaaggagaagaatatgatagaaatagtctcaaaactaaaaattgcag

Basic information

species Selaginella moellendorffii
transcript EFJ29932
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169033459|gb|FE441803.1|FE441803
EST:     ATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCAT                         GACCGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTTTATTAGCTAA
genomic: ATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCATgtaaggagaa ... aaaattgcagGACGGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTT-A---GCTAA
EST: gi|169066588|gb|FE474148.1|FE474148
EST:     GTTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCAT                         GACGGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTTAGCTAAATAA
genomic: ATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCATgtaaggagaa ... aaaattgcagGACGGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTTAGCTAAATAA
EST: gi|169081850|gb|FE487957.1|FE487957
EST:     ATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCAT                         GACCGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTTTATTAGCTAA
genomic: ATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCATgtaaggagaa ... aaaattgcagGACGGCAACTAACCAGGGCCATTCCCATTTGTAAGCCTTTT-A---GCTAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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GTTCTCAAGCACAAGAATGGACGCTATGGAGTGGCCGGAATTTGCAATGGTGGCGGTGGAGCCTCGGCTCTAGTCATCCAATCTCTCATgtaaggagaagaatatgatagaaatagtctcaaaactaaaaattgcag

- - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG