Sequence
atgc intronic sequence ATGC exonic sequenceTGGTCAAAACATGACAACAAGAGATATGCAGAAGGTTGTTCAGGCACTTCCACAGTACCGGGATCAAATTGAAAAGCTCAGCCTTCACATTGATgtcagtatatgccttcttttaattttttgcgataacactaggcaattgcag
Basic information
species | Selaginella moellendorffii |
transcript | EFJ29221 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ29221 (Selaginella moellendorffii), 5'ss of exon 13
lower sequence: GRMZM2G052880_T01 (Zea mays), 5'ss of exon 13
---TGGTCAAAACATGACAACAAGAGATATGCAGAAGGTTGTTCAGGCACTTCCACAGTACCGGGATCAAATTGAAAAGCTCAGCCTTCACATTGATgtcagt---atatgccttcttttaattttt---tgcgataacactaggcaattgcag-------------------------------------------
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AACCGATGGAGAATTATCGACAAGAGATTTACAAAAAATGGTTCAGGCTCTTCCACAGTACAGTGATCAAATTGATAAGCTTTCCCTGCATGTTGAGgttggttttatattgtttgcgacgaactttaaattcattgttgcttgtctagtgttgcactacattgctcataagtcaaacatggacttgaatggattga
upper sequence: EFJ29221 (Selaginella moellendorffii), 5'ss of exon 13
lower sequence: PP1S468_8V6.1 (Physcomitrella patens), 5'ss of exon 13
---TGGTCAAAACATGACAACAAGAGATATGCAGAAGGTTGTTCAGGCACTTCCACAGTACCGGGATCAAATTGAAAAGCTCAGCCTTCACATTGATgtcagtatatgccttcttttaattttttgcgataacactaggcaattgcag--------------------------------------------------------------------------------------------------------------------------------------------
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GGAGGGTCAGGTACTTTCAACAAGGGACATGAAGCAATTGGTGCAGGCACTTCCCCAATATCGGGATCAAATTGACAAGCTTAGCCTTCACGTGAATgtatgt---taccaacctatgattcttagtctcgactactggttactgaaggattttagtattattatttgttgatactttttgtaattgcaagagtgaagtgatagtttatctgcagattgctttttcgcagaacttgtttgttctcttctcaaagtactggatactcaaaaagttgtactttgttctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169078646|gb|FE487078.1|FE487078EST: CACTTCCACAGTACCGGGATCAAATTGAAAAGCTCAGCCTTCACATTGAT ATCGCTACAGCCTTGAACAGTAAAATAAGAACGCATTGTCTCAGTGATGTC
genomic: CACTTCCACAGTACCGGGATCAAATTGAAAAGCTCAGCCTTCACATTGATgtcagtatat ... gcaattgcagATCGCTACAGCCTTGAACAGTAAAATAAGAACGCATTGTCTCAGTGATGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTCAAAACATGACAACAAGAGATATGCAGAAGGTTGTTCAGGCACTTCCACAGTACCGGGATCAAATTGAAAAGCTCAGCCTTCACATTGATgtcagtatatgccttcttttaattttttgcgataacactaggcaattgcag
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