1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTGTGAGTGAGTACGCGGTCACTGGCAACGATGCTGGCCGCGGGAGTCTCTTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttccattagaaataaatttcgagcgtaactttttgtaccatag
species | Selaginella moellendorffii |
transcript | EFJ22660 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAG TGATGTTGTACATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGAEST: gi|169031502|gb|FE438967.1|FE438967
genomic: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttcca ... tgtaccatagTGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGA
EST: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAG TGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGAEST: gi|169104812|gb|FE508709.1|FE508709
genomic: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttcca ... tgtaccatagTGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGA
EST: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAG TGATGTTGTACATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGAEST: gi|169079022|gb|FE488585.1|FE488585
genomic: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttcca ... tgtaccatagTGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGA
EST: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAG TGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGAEST: gi|169115579|gb|FE517789.1|FE517789
genomic: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttcca ... tgtaccatagTGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGA
EST: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAG TGATGTTGTACATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGAEST: gi|169055154|gb|FE461041.1|FE461041
genomic: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttcca ... tgtaccatagTGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGA
EST: CTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAG TGATGTTGTACATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGAEST: gi|169115578|gb|FE517788.1|FE517788
genomic: CTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttcca ... tgtaccatagTGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGA
EST: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAG TGATGTTGTACATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGAEST: gi|169071666|gb|FE477095.1|FE477095
genomic: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttcca ... tgtaccatagTGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGA
EST: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAG TGATGTTGTACATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGAEST: gi|169054490|gb|FE462158.1|FE462158
genomic: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttcca ... tgtaccatagTGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGA
EST: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAG TGATGTTGTACATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGA
genomic: TTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttcca ... tgtaccatagTGATGTTGTGCATATGACAAGCTACGCTCCCCTCTTTGTAAATAACAACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGAGTGAGTACGCGGTCACTGGCAACGATGCTGGCCGCGGGAGTCTCTTGGCTGCACTCGCAGAAGCAGCATTCTTGATTGGCATTGAGCGAAACAGgtaacttccattagaaataaatttcgagcgtaactttttgtaccatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC