Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGGCAGGAAAAGCAGCAGATGTTTTCTACTGCCTCAAGCTCTTGGAGGCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactttggaaactcttttctctcaacacaagctttcgtttttgcgtag

Basic information

species Selaginella moellendorffii
transcript EFJ30498
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30498 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: LOC_Os07g01760.1 (Oryza sativa), 5'ss of exon 11
CTCAGGCAGGAAAAGCAGCAGATGTTTTCTACTGCCTCAAGCTCTTGGAGGCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactttggaaactcttttctctcaacacaagctttcgtttttgcgtag-----------------------------------------------------
    ||| || ||||| || |||||||||||||||||||||||  | || || || ||||| ||||| || || || || || ||||| |||||||||||||  |   ||      | |||   | |  | |      |||    || | ||                                                      
AAAGGGCTGGCAAAGCGGCCGATGTTTTCTACTGCCTCAAGCTTCTTGAAGCAACTGGAATATCCACTGTTCCAGGGTCAGGTTTCGGACAAAAAGAAGGgtaggtgttt------cccttacatatacatatgtatcttcaaagtttcataaacatcagagatctctcaactagacatgactcaggagtacctgaatttatcctt

upper sequence: EFJ30498 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: GRMZM5G840582_T03 (Zea mays), 5'ss of exon 12
CTCAGGCAGGAAAAGCAGCAGATGTTTTCTACTGCCTCAAGCTCTTGGAGGCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgag---------aactttggaaactc-ttttctctcaacacaagctttcgtttttgcgtag-------------------------
     || || ||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||| || || || ||||| || || || || |||||||  |          |   ||  ||    || ||| | |   |  | |   |||||   ||                           
AGAGAGCCGGCAAAGCAGCAGACGTTTTCTACTGCCTCAAGCTCCTGGAGGCAACGGGGATTTCCACTGTTCCGGGATCTGGTTTTGGGCAGAAGGAAGGgtatgtgtatatatgatgatgataatgagttatctgtgagtgctggatgaagttttgaagtgatgggtttatttatgaatgaacacag

upper sequence: EFJ30498 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: AT1G70580.2 (Arabidopsis thaliana), 5'ss of exon 12
CTCAGGCAGGAAAAGCAGCAGATGTTTTCTACTGCCTCAAGCTCTTGGAGGCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactttggaaactcttttctctcaacacaagctt-tcgtttttgc-gtag-----------------------------
  || || |||||||   | || |||||||||||||| |||||||| || || || ||||| ||||| || || ||||||||||| || |||||||||||||   ||      |||| || |    |  |||    | | |  || |||| | |                              
AACAAGCCGGAAAAGTCCCTGACGTTTTCTACTGCCTTAAGCTCTTAGAAGCCACAGGAATCTCCACAGTTCCAGGCTCTGGATTTGGACAAAAAGAAGGgtagaaa-----aaaaccctctgtgttttacagtttcatgttattcttgcagcaagctcatttttgtttgtctgtttgtttcag

upper sequence: EFJ30498 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: AT1G23310.1 (Arabidopsis thaliana), 5'ss of exon 13
CTCAGGCAGGAAAAGCAGCAGATGTTTTCTACTGCCTCAAGCTCTTGGAGGCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactttggaaactct-tttctctcaacacaagctttcgtttttgcgtag---------------------------
  || || |||||||   |||| ||||||||||| ||||||||||| || || || ||||| ||||| || || ||||||||||| || || |||||||||| |  | | ||  |   || ||||| ||      | ||    | ||    |                             
AACAAGCTGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatctgctactactgtttctttcttgctcatctgatctcttcttatgaactcattccacttgtggattttgacag

upper sequence: EFJ30498 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: AT1G23310.2 (Arabidopsis thaliana), 5'ss of exon 13
CTCAGGCAGGAAAAGCAGCAGATGTTTTCTACTGCCTCAAGCTCTTGGAGGCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactttggaaactct-tttctctcaacacaagctttcgtttttgcgtag-----------------------------------------------------------
  || || |||||||   |||| ||||||||||| ||||||||||| || || || ||||| ||||| || || ||||||||||| || || |||||||||| |  | | ||  |   || ||||| ||      | ||    | ||    |                                                             
AACAAGCTGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAAAGAAGGgtaaagaatctgctactactgtttctttcttgctcatctgatctcttcttatgaactcattccacttgtggattttgacagtgtgttccatctgaggacaacaatcctgccag

upper sequence: EFJ30498 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: Vv00s0225g00130.t01 (Vitis vinifera), 5'ss of exon 13
CTCAGGCAGGAAAAGCAGCAGATGTTTTCTACTGCCTCAAGCTCTTGGAGGCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactttggaaactcttttc-tctcaacacaagctttcgtttttgcgtag----------------------------------------------
   |||| || ||||  || ||||||||||||||||||||||||||||| || || ||||||||||| ||||| || || ||||| || || |||||||||| |    ||       |  || | |   ||    | |    || ||  | |                                                
AAAAGGCTGGTAAAGTGGCTGATGTTTTCTACTGCCTCAAGCTCTTGGAAGCCACTGGAATTTCCACTGTCCCTGGTTCAGGATTTGGACAGAAAGAAGGgtaattttttcccttgtttcttccgttgtaatttcaacaactgtcttctcattcctttcacaatgtttctacttgcgtgaaacctttcatgttactgata

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169058050|gb|FE463958.1|FE463958
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169067534|gb|FE475263.1|FE475263
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169106825|gb|FE508773.1|FE508773
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169066459|gb|FE474682.1|FE474682
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169065717|gb|FE476205.1|FE476205
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169045643|gb|FE452604.1|FE452604
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169037629|gb|FE446370.1|FE446370
EST:     GGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169046057|gb|FE453954.1|FE453954
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169035664|gb|FE445434.1|FE445434
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169057472|gb|FE465776.1|FE465776
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169112479|gb|FE512756.1|FE512756
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169088621|gb|FE495979.1|FE495979
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169056996|gb|FE466223.1|FE466223
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169042322|gb|FE452870.1|FE452870
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169036857|gb|FE444974.1|FE444974
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169066183|gb|FE475683.1|FE475683
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169073090|gb|FE484143.1|FE484143
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169019369|gb|FE427679.1|FE427679
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169088622|gb|FE495980.1|FE495980
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169067159|gb|FE474927.1|FE474927
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169044151|gb|FE452153.1|FE452153
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169029047|gb|FE437550.1|FE437550
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169035271|gb|FE443741.1|FE443741
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169078707|gb|FE486515.1|FE486515
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169059960|gb|FE467322.1|FE467322
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169020173|gb|FE428235.1|FE428235
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169106600|gb|FE504635.1|FE504635
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169067160|gb|FE474928.1|FE474928
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATNTTGCCATTGGAGCAAGACATGCCANG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169066245|gb|FE475199.1|FE475199
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169067533|gb|FE475262.1|FE475262
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169106824|gb|FE508772.1|FE508772
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169029665|gb|FE437336.1|FE437336
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169097503|gb|FE497945.1|FE497945
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169104416|gb|FE503752.1|FE503752
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169111757|gb|FE511956.1|FE511956
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169067096|gb|FE474474.1|FE474474
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169069054|gb|FE477746.1|FE477746
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169037822|gb|FE442533.1|FE442533
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169054114|gb|FE462349.1|FE462349
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169044380|gb|FE453318.1|FE453318
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169100332|gb|FE501129.1|FE501129
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
EST: gi|169066182|gb|FE475682.1|FE475682
EST:     GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGG                         AACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG
genomic: GCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 50

CTCAGGCAGGAAAAGCAGCAGATGTTTTCTACTGCCTCAAGCTCTTGGAGGCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactt ... ttttgcgtagAACTTTGCATTTGAGAACAACGATTTTGCCATTGGAGCAAGACATGCCAGGCATCATGGCCAAGTTCCAAAAGTTCCATGCCGATTTCATGGCACAGTAC




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCAGGCAGGAAAAGCAGCAGATGTTTTCTACTGCCTCAAGCTCTTGGAGGCGACGGGAATTTCCACGGTCCCCGGCTCTGGATTCGGCCAAAAAGAAGGgtgagaactttggaaactcttttctctcaacacaagctttcgtttttgcgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG