1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CTGCAAAAGCCCGCAGCGTTTGACATTATCGAGGAGCACCATCTTTATGATGCTCTTCATGGCAATgtaagttacatgtaagctacatgtgtaacctctgatccatgttgcatttctattttctgatcag
species | Selaginella moellendorffii |
transcript | EFJ24868 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CGTTTGACATTATCGAGGAGCACCATCTTTATGATGCTCTTCATGGCAAT ATTGCCCTTCTAATGAAGCTGGATTCGAAAAGAGCCATTGACTTACTTGTTEST: gi|169114156|gb|FE516835.1|FE516835
genomic: CGTTTGACATTATCGAGGAGCACCATCTTTATGATGCTCTTCATGGCAATgtaagttaca ... ttctgatcagATTGCCCTTCTAATGAAGCTGGATTCGAAAAGAGCCATTGACTTACTTGTT
EST: CGTTTGACATTATCGAGGAGCACCATCTTTATGATGCTCTTCATGGCAAT ATTGCCCTTCTAATGAAGCTGGATTCGAAAAGAGCCATTGACTTACTTGTTEST: gi|169020470|gb|FE431717.1|FE431717
genomic: CGTTTGACATTATCGAGGAGCACCATCTTTATGATGCTCTTCATGGCAATgtaagttaca ... ttctgatcagATTGCCCTTCTAATGAAGCTGGATTCGAAAAGAGCCATTGACTTACTTGTT
EST: CGTTTGACATTATCGAGGAGCACCATCTTTATGATGCTCTTCATGGCAAT ATTGCCCTTCTAATGAAGCTGGATTCGAAAAGAGCCATTGACTTACTTGTTEST: gi|169097119|gb|FE500083.1|FE500083
genomic: CGTTTGACATTATCGAGGAGCACCATCTTTATGATGCTCTTCATGGCAATgtaagttaca ... ttctgatcagATTGCCCTTCTAATGAAGCTGGATTCGAAAAGAGCCATTGACTTACTTGTT
EST: CGTTTGACATTATCGAGGAGCACCATCTTTATGATGCTCTTCATGGCAAT ATTGCCCTTCTAATGAAGCTGGATT
genomic: CGTTTGACATTATCGAGGAGCACCATCTTTATGATGCTCTTCATGGCAATgtaagttaca ... ttctgatcagATTGCCCTTCTAATGAAGCTGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCAAAAGCCCGCAGCGTTTGACATTATCGAGGAGCACCATCTTTATGATGCTCTTCATGGCAATgtaagttacatgtaagctacatgtgtaacctctgatccatgttgcatttctattttctgatcag
- - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - GGAGCA