Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGCATATGCAGACTCCCGAACAGTGGCAAATTTCTTTCAATCCAGCATACTCGTACTGGGCATATTACGTGTATGCCAATCTCTACACACTTAACAAGgtaagcttttcttagttttctcttcaatacgttcgaactgtgctgttgtag

Basic information

species Selaginella moellendorffii
transcript EFJ17267
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17267 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: PP1S77_89V6.1 (Physcomitrella patens), 5'ss of exon 13
TAAGCATATGCAGACTCCCGAACAGTGGCAAATTTCTTTCAATCCAGCATACTCGTACTGGGCATATTACGTGTATGCCAATCTCTACACACTTAACAAGgtaagcttttcttagtt---ttctcttcaatacgttcgaactgtgctgttgtag----------------------------------------------
 ||||| |||||  | || |   | ||| | | | ||||||||||||| || || |||||||| || |||||||| |||||||||||    || |||||||||     ||||    |   | || |  |      |      ||  ||   ||                                               
GAAGCACATGCAACCACCTGCGAAATGGGATAATCCTTTCAATCCAGCTTATTCATACTGGGCGTACTACGTGTACGCCAATCTCTATGTCCTCAACAAGgtactgcattctcgactagatactttaaagggaaattacgaagtcttgacataacctgattctttaatgcaagcagggtcaatatgttttgcaagatcgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169026541|gb|FE434802.1|FE434802
EST:     ACTCGTACTGGGCATATTACGTGTATGCCAATCTCTACACACTTAACAAG                         CTACGAGAGTCGAAAGGAATGTCTACGATCAAATTCCGTCCTCACGCTGGC
genomic: ACTCGTACTGGGCATATTACGTGTATGCCAATCTCTACACACTTAACAAGgtaagctttt ... gctgttgtagCTACGAGAGTCGAAAGGAATGTCTACGATCAAATTCCGTCCTCACGCTGGC
EST: gi|169066740|gb|FE473299.1|FE473299
EST:     ACTCGTACTGGGCATATTACGTGTATGCCAATCTCTACACACTTAACAAG                         CTACGAGAGTCGAAAGGAATGTCTACGATCAAATTCCGTCCTCACGCTGGC
genomic: ACTCGTACTGGGCATATTACGTGTATGCCAATCTCTACACACTTAACAAGgtaagctttt ... gctgttgtagCTACGAGAGTCGAAAGGAATGTCTACGATCAAATTCCGTCCTCACGCTGGC
EST: gi|169074137|gb|FE482382.1|FE482382
EST:     ACTCGTACTGGGCATATTACGTGTATGCCAATCTCTACACACTTAACAAG                         CTACGAGAGTCGAAAGGAATGTCTACGATCAAATTCCGTCCTCACGCTGGC
genomic: ACTCGTACTGGGCATATTACGTGTATGCCAATCTCTACACACTTAACAAGgtaagctttt ... gctgttgtagCTACGAGAGTCGAAAGGAATGTCTACGATCAAATTCCGTCCTCACGCTGGC
EST: gi|169074136|gb|FE482381.1|FE482381
EST:     GTATGCCAATCTCTACACACTTAACAAG                         CTACGAGAGTCGAAAGGAATGTCTACGATCAAATTCCGTCCTCACGCTGGC
genomic: GTATGCCAATCTCTACACACTTAACAAGgtaagctttt ... gctgttgtagCTACGAGAGTCGAAAGGAATGTCTACGATCAAATTCCGTCCTCACGCTGGC