1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGACGAGTTTGAAGATATGCTACGTGCTTTGACGCTTGAAAGAAGTCAAATAAGAGATGCAATGGGTTTTGCTCTTGACAACTCTGAAGCTTCTGGAGAGgtatgatttggtgtttctctgggaaaaaaaaaaaaaaaaacacttgcag
species | Selaginella moellendorffii |
transcript | EFJ16538 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TAAGAGATGCAATGGGTTTTGCTCTTGACAACTCTGAAGCTTCTGGAGAG GTGGTTGATGTCTTGACGGAGTCTCTTACAATCAAGGAAACACCAATTCCAEST: gi|169086752|gb|FE494077.1|FE494077
genomic: TAAGAGATGCAATGGGTTTTGCTCTTGACAACTCTGAAGCTTCTGGAGAGgtatgatttg ... acacttgcagGTGGTTGATGTCTTGACGGAGTCCCTTACAATCAAGGAAACACCAATTCCG
EST: TAAGAGATGCAATGGGTTTTGCTCTTGACAACTCTGAAGCTTCTGGAGAG GTGGTTGATGTCTTGACGGAGTCCCTTACAATCAAGGAAACACCAATTCCGEST: gi|169109400|gb|FE510263.1|FE510263
genomic: TAAGAGATGCAATGGGTTTTGCTCTTGACAACTCTGAAGCTTCTGGAGAGgtatgatttg ... acacttgcagGTGGTTGATGTCTTGACGGAGTCCCTTACAATCAAGGAAACACCAATTCCG
EST: TAAGAGATGCAATGGGTTTTGCTCTTGACAACTCTGAAGCTTCTGGAGAG GTGGTTGATGTCTTGACGGAGTCTCTTACAATCAAGGAAACACCAATTCCAEST: gi|169057052|gb|FE466279.1|FE466279
genomic: TAAGAGATGCAATGGGTTTTGCTCTTGACAACTCTGAAGCTTCTGGAGAGgtatgatttg ... acacttgcagGTGGTTGATGTCTTGACGGAGTCCCTTACAATCAAGGAAACACCAATTCCG
EST: TAAGAGATGCAATGGGTTTTGCTCTTGACAACTCTGAAGCTTCTGGAGAG GTGGTTGATGTCTTGACGGAGTCCCTTACAATCAAGGAAACACCAATTCCG
genomic: TAAGAGATGCAATGGGTTTTGCTCTTGACAACTCTGAAGCTTCTGGAGAGgtatgatttg ... acacttgcagGTGGTTGATGTCTTGACGGAGTCCCTTACAATCAAGGAAACACCAATTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACGAGTTTGAAGATATGCTACGTGCTTTGACGCTTGAAAGAAGTCAAATAAGAGATGCAATGGGTTTTGCTCTTGACAACTCTGAAGCTTCTGGAGAGgtatgatttggtgtttctctgggaaaaaaaaaaaaaaaaacacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA