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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGAATCGTCATATTGCTCAGGCGCTGCGTATATGATAACGATGATGAGgtaacaattcaacattgtttggttcaaaataaacaagggttgagattcag

Basic information

species Selaginella moellendorffii
transcript EFJ15122
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169055108|gb|FE461957.1|FE461957
EST:     CGCGAATCGTCATATTGCTCAGGCGCTGCGTATATGATAACGATGATGAG                         GTGCGTGACCGTGCAACTATGTACTTGACTGCACTTGAAGGGGACCA-GCC
genomic: CGCGAATCGTCATATTGCTCAGGCGCTGCGTATATGATAACGATGATGAGgtaacaattc ... tgagattcagGTGCGTGACCGTGCAACTATGTACTTGACTGCACTTGAAGGGGACCAAGCC
EST: gi|169112514|gb|FE510178.1|FE510178
EST:     CGCGAATCGTCATATTGCTCAGGCGCTGCGTATATGATAACGATGATGAG                         GTGCGTGACCGTGCAACTATGTACTTGACTGCACTTGAAGGGGAC-AAGCC
genomic: CGCGAATCGTCATATTGCTCAGGCGCTGCGTATATGATAACGATGATGAGgtaacaattc ... tgagattcagGTGCGTGACCGTGCAACTATGTACTTGACTGCACTTGAAGGGGACCAAGCC
EST: gi|169098061|gb|FE496895.1|FE496895
EST:     CGCGAATCGTCATATTGCTCAGGCGCTGCGTATATGATAACGATGATGAG                         GTGCGTGACCGTGCAACTATGTACTTGACTGCACTTGAAGGGGACCAAGCC
genomic: CGCGAATCGTCATATTGCTCAGGCGCTGCGTATATGATAACGATGATGAGgtaacaattc ... tgagattcagGTGCGTGACCGTGCAACTATGTACTTGACTGCACTTGAAGGGGACCAAGCC
EST: gi|169029489|gb|FE438889.1|FE438889
EST:     CGCGAATCGTCATATTGCTCAGGCGCTGCGTATATGATAACGATGATGAG                         GTGCGTGACCGTGCAACTATGTACTTGACTGCACTTGAAGGGGACCAAGCC
genomic: CGCGAATCGTCATATTGCTCAGGCGCTGCGTATATGATAACGATGATGAGgtaacaattc ... tgagattcagGTGCGTGACCGTGCAACTATGTACTTGACTGCACTTGAAGGGGACCAAGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 27

CCGCGAATCGTCATATTGCTCAGGCGCTGCGTATATGATAACGATGATGAGgtaacaattc ... tgagattcagGTGCGTGACCGTGCAACTATGTACTTGACTGCACTTGAAGGGGACCAAGCCGAAAGAGAAGAAGCGAAGCATTCTCTTTTTGATCCACTAAAGATACCTC




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