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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCGTTCTAAGACGCAATATTGAAGAGGTTATTGCAAGCTTTTTGCGGGAGGGACTTTCTCCTGCCGAGACTATGATTGGTCATCTAATTGAAATGGAGgtacaattctgtctctctttgttttttatttctgaattcaaccgcatgtgtaaaacag

Basic information

species Selaginella moellendorffii
transcript EFJ15047
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15047 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: PP1S101_111V6.1 (Physcomitrella patens), 5'ss of exon 9
TCCCGTTCTAAGACGCAATATTGAAGAGGTTATTGCAAGCTTTTTGCGGGAGGGACTTTCTCCTGCCGAGACTATGATTGGTCATCTAATTGAAATGGAGgtacaattctgtctc-tctttgttttttatttctgaat-tcaaccgcatgtgtaaaacag------------------------------------------
|||   | |  || |   |||||| || ||  | || || ||  |  | || ||  |  ||||||| || ||||||||||| ||||| ||||||||||||||| | |  |   || |   |      || ||  |  | | |  |  ||||| |   |||                                          
TCCACATTTGCGAAGACGTATTGAGGAAGTGGTGGCTAGTTTCCTTTGTGAAGGTTTAGCTCCTGCAGAAACTATGATTGGCCATCTCATTGAAATGGAGgta-attgatacttcattgctaagcactacttggggctgttattcttatgtg-attgcagattattctgtttcagttttaaggcatgtcttcacccttgtcc

upper sequence: EFJ15047 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: PP1S82_15V6.1 (Physcomitrella patens), 5'ss of exon 12
TCCCGTTCTAAGACGCAATATTGAAGAGGTTATTGCAAGCTTTTTGCGGGAGGGACTTTCTCCTGCCGAGACTATGATTGGTCATCTAATTGAAATGGAGgtacaattctgtctctctttgttttttatttctgaattcaaccgcatgtgtaaaacag--------------------------------------------
|||| || |||||||    ||||| || ||  | || |  || || || || ||  |  ||||||| || ||||||||||| || ||||||||||||||||| |  || |  ||    |        |    |   || |   |  |   |||   ||                                            
TCCCCTTTTAAGACGTCGCATTGATGAAGTGGTAGCCAATTTCTTACGTGATGGCTTGGCTCCTGCAGAAACTATGATTGGACACCTAATTGAAATGGAGgtgc--tttttactgctctaaaccacaagcattagttttatatgtgttaataactaagttgaacttcatattcctacataagcgtgcgttgattttggatgc

upper sequence: EFJ15047 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: PP1S49_216V6.1 (Physcomitrella patens), 5'ss of exon 14
TCCCGTTCTAAGACGCAATATTGAAGAGGTTATTGCAAGCTTTTTGCGGGAGGGACTTTCTCCTGCCGAGACTATGATTGGTCATCTAATTGAAATGGAGgtac----aattctgtctctc--tttgttttttatttctgaattcaaccgcatgtgtaaaacag-------------------------------------
|||   | |  ||      || || || ||  | | ||| ||| | || || ||  | || ||||| || || |||||||||||||| |||||||||||||||     |  | |||   |     | | || |   | | | |   |  |  ||| | ||   |                                     
TCCACATTTGCGAAAGCGCATCGAGGAAGTGGTAGGAAGTTTTCTTCGTGAAGGTTTATCCCCTGCAGAAACCATGATTGGTCATCTGATTGAAATGGAGgtaagtgaagctttgttagtggacctatgttgtggctgttagtagtattgt-tgtatgaatttggttacgaaactatctcgttctttgcttaataaaatga

upper sequence: EFJ15047 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: PP1S221_85V6.1 (Physcomitrella patens), 5'ss of exon 14
TCCCGTTCTAAGACGCAATATTGAAGAGGTTATTGCAAGCTTTTTGCGGGAGGGACTTTCTCCTGCCGAGACTATGATTGGTCATCTAATTGAAATGGAGgtac---aattctgt-------ctctctttgt--tttttatttctgaattcaaccg--catgtgtaaaacag----------------------------
|||   |||  || |    || || || ||| | || || || ||||| || ||  | ||||| || || || |||||||||||||| |||||||||||||||    |  || |        || || ||||   ||||  || ||  ||  |  |  |     | ||   |                            
TCCACATCTGCGAAGACGCATCGAGGAAGTTGTAGCTAGTTTCTTGCGTGAAGGTTTGTCTCCCGCAGAAACCATGATTGGTCATCTCATTGAAATGGAGgtattgaagctccggtacccagctttcgttgtagcttttgcttttgtttttgagtgatcgctaattaatttgttgtagtttgatagaacatagtgaaacg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169060132|gb|FE468118.1|FE468118
EST:     AGGGACTTTCTCCTGCCGAGACTATGATTGGTCATCTAATTGAAATGGAG                         ATGGATTACATNCA-TACTTCGCACCCGGGATTCATTG
genomic: AGGGACTTTCTCCTGCCGAGACTATGATTGGTCATCTAATTGAAATGGAGgtacaattct ... tgtaaaacagATGGATTACAT-CAATACTTCGCACCCGGGATTCATTG