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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttctttctgtatcagctgtgatacttatgttgcctgccacag

Basic information

species Selaginella moellendorffii
transcript EFJ14283
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 13
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttctttctgta-tcagctgtgatacttat----gttgcctgccacag----------------------
|||||||||||||||| || || || || || || |||||||| ||||| || || ||||| ||||||||||| || || ||||  || || |||||||||| ||        ||||  | ||   |  | || |     | ||| |   |  |                      
TTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGgtttgtaactacactgttcttagtgctcgtgctcactacaggtgcttatgattgattttgtttaattcttttccag

upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 13
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgc--cttctttctgta-tcagctgtgatacttatgttgcctgccacag------------------------------------
|||||||||||||||| || || || || || || |||||||| ||||| ||||| ||||| || || ||||| |||||||||| |||||| |||||||||| ||   |     ||| || |    |    |  |||  ||       |||                                     
TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGCTTTGAACCCTACACATCTAATATTTACAGTCGACGGGTTCTAAGgtctgtaacaatactctttacttctttagagtgtttacattttgacttacatgtgcatatatgattgatctttctatttttattccag

upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 13
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgcc----ttctttctgtatcagctgtgatacttatgttgcctgccacag-------------------------------------
|||||||||||||||| || || || || || || |||||||| ||||| ||||||||||| || || || || ||||| |||| |||||| |||||||||| ||      | ||  ||   ||   |  | |  |||  |||      |||                                      
TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaacaatactccctacttct-ttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccag

upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 13
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgta---tgccttctttctgtatca-gctgtgatacttatgttgcctgccacag----------------------
||||||| || ||||| || |||||||| ||||| |||||||| || || |||||||||||||| ||||| || ||||| ||||  ||  | ||||||||||    |||| | |     ||| | | | |||||  |   |   ||  |                          
TTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgccatatcatcttattatgttttgatatcttattgatctatcttgattgttaactgtttgtctttcag

upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 15
--------TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttctttctgtatcagc----tgtgatacttatgttgcctgccacag-----------------------------------------------
        ||||||| || ||||| || |||||||| ||||| |||||||| || || |||||||||||||| ||||| || ||||| |||| |||  | ||| |||||        | | |  | | |      | |||||  |   |   ||                                                      
CTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGTCGTAGAgttttaaggctcattgccgtaccatcttattattttttgatatcttattgatctattttgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaag

upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 13
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttctttctgtatcagctgtgatacttatgt-tgcctgccacag----------------------------------
| || || || ||||| || ||||| || ||||| ||||||||||| |||||||||||||| || ||||| || || || |||| |||  | ||| |||||| ||| || |      ||    | || |  |  |||     |||| ||                                   
TCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttttcatcccattttttctg-tcttggtgtactattgcctcatgatcctatcttactgggctactgtttgtttctag

upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: GLYMA04G39500.1 (Glycine max), 5'ss of exon 13
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttctt-tctgtatcagctgtgatacttatgttgcctgccacag---------------------------------
| || || || ||||| || ||||| || ||||| ||||||||||| || ||||||||||| || ||||| || ||||| |||| |||  | ||| |||||| ||| || |   | || | |       |   | | ||   | ||   |                                 
TCGTGGCCCCTATGCCAACTGCATCCACTAGCCAGATTCTTGGAAATAATGAGTGTTTTGAACCATATACTTCAAATATCTACAGTCGTAGAGTTTTAAGgtttgctttttcgcccgtgttattctgtcttggtgtattattttcccatgatcctatcttattgggcaactgtttgtttctag

upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 12
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 13
TTGTTGCTCCAATGCCGACAGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttctttctgtatc--------------agctgtgatacttatgttgcctgccacag--------------------------
|||| || || ||||| || || ||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||| |||| | |  | |||||||||| ||  ||  | |  || |              || | |  ||||| |||||||  | |                             
TTGTAGCACCTATGCCCACTGCTTCAACCAGCCAGATTCTTGGAAACAATGAGTGCTTTGAGCCCTATACTTCCAATATCTACAGTAGGAGAGTTCTAAGgtttgttttgctaccctaacctgttcattttctaagatttagtacttttgttgccatctaagtctcctctttccttgtttctttgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169032118|gb|FE438023.1|FE438023
EST:     GAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAG                         TGGTGAATTTGTTGTGGTTAACAAGCATTTGCTGAACGATTTGACCGATTT
genomic: GAGTGTTTTGAGCCTTATACATCCAATATTTACACTCGACGCGTTCTAAGgtatgccttc ... cctgccacagTGGTGAATTTGTTGTGGTTAACAAGCATTTGCTGAACGATTTGACCGATTT