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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacatagcgtatttatttttgtttctttctaaatgaagatttctgtag

Basic information

species Selaginella moellendorffii
transcript EFJ32604
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32604 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: PP1S79_54V6.1 (Physcomitrella patens), 5'ss of exon 11
GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgt----ataacatagcgtatttatttttgtttctttctaaatgaagatttctgtag-------------------------------------------------------------------------------------------------------------------------------
||| |||| | |||||||||||| || || |||||||||||  | |||||||| | ||||||||||||     |    |    ||     |  | | |  | |   |  |  |    |||                                                                                                                                 
GCAGCTACGCCAGAGTTCAAGGCGTACCAGGAACAAGTTCTGAGCAACTCTGCACGTTTTGCCAAGgtcgttgtcttttcatttaggccatgctatgtgatacctgacaagaaacagtgtgatcagtagtatattttgttgtactacaaagtaattaggtgatgatacttctctagtaacgtttacaagtattttatccttttggtattaatttgtgggtgatttatgcaattggtttaaaacatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169115018|gb|FE516383.1|FE516383
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169041586|gb|FE449547.1|FE449547
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169030970|gb|FE440331.1|FE440331
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169097027|gb|FE498418.1|FE498418
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169087280|gb|FE491693.1|FE491693
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169035180|gb|FE442571.1|FE442571
EST:     AGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCCC
genomic: AGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169019624|gb|FE427973.1|FE427973
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169062066|gb|FE469151.1|FE469151
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169044082|gb|FE451668.1|FE451668
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169070247|gb|FE478068.1|FE478068
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169062626|gb|FE470296.1|FE470296
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169026368|gb|FE433459.1|FE433459
EST:     CAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: CAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169102881|gb|FE505246.1|FE505246
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169082302|gb|FE488045.1|FE488045
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169067937|gb|FE474782.1|FE474782
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169036058|gb|FE446764.1|FE446764
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169036891|gb|FE443851.1|FE443851
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169080653|gb|FE487174.1|FE487174
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169088705|gb|FE491539.1|FE491539
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169067649|gb|FE475833.1|FE475833
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169113159|gb|FE514405.1|FE514405
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169035181|gb|FE442572.1|FE442572
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169077298|gb|FE485600.1|FE485600
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169030299|gb|FE440024.1|FE440024
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169025096|gb|FE434696.1|FE434696
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169114785|gb|FE516046.1|FE516046
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169087153|gb|FE493100.1|FE493100
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169075644|gb|FE482030.1|FE482030
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169070246|gb|FE478067.1|FE478067
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169035575|gb|FE445345.1|FE445345
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169075798|gb|FE482795.1|FE482795
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169087446|gb|FE492223.1|FE492223
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169061497|gb|FE469596.1|FE469596
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169101299|gb|FE501987.1|FE501987
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169019269|gb|FE428182.1|FE428182
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169052582|gb|FE460921.1|FE460921
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169113402|gb|FE514729.1|FE514729
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169112011|gb|FE510689.1|FE510689
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169113160|gb|FE514406.1|FE514406
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169069491|gb|FE479535.1|FE479535
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169087332|gb|FE491745.1|FE491745
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169047242|gb|FE456491.1|FE456491
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169051133|gb|FE458680.1|FE458680
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169048577|gb|FE454446.1|FE454446
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169074935|gb|FE483817.1|FE483817
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169096115|gb|FE500275.1|FE500275
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169088634|gb|FE491520.1|FE491520
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169114933|gb|FE515882.1|FE515882
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169094799|gb|FE492950.1|FE492950
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169112012|gb|FE510690.1|FE510690
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169094384|gb|FE495584.1|FE495584
EST:     AAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: AAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169019686|gb|FE427489.1|FE427489
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169023492|gb|FE431403.1|FE431403
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169115017|gb|FE516382.1|FE516382
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCACG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169067635|gb|FE475832.1|FE475832
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
EST: gi|169044083|gb|FE451669.1|FE451669
EST:     TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAG                         CATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC
genomic: TCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 89

GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacata ... atttctgtagCATTTGATGGCAAAAGGTTACGAGCTTGTGTCAGGTGGAACAGAGAATCACTTAGTTCTGGTCAACTTGAAAAACAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATCTACACAAGAGTTCAAGGCTTATCAAGAACAAGTTCTTCGAAACTCTGCTCATTTTGCCAAGgtataacatagcgtatttatttttgtttctttctaaatgaagatttctgtag

- - - - - - - - - - - - - - AAGAAC