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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAAAGAAAGATGCGCTGTGCTCAAATTTGTAACGAGCTGCTCTCGTGCACCTTTGCTGGGATTCAAACACTTGCAGCCTCCGTTTACAATCCACAAGgtttggcaatcttaagcatcaacggttttagctcgttcccgtttttctttcttag

Basic information

species Selaginella moellendorffii
transcript EFJ30786
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30786 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 13
TGTCAAAGAAAGATGCGCTGTGCTCAAATTTGTAACGAGCTGCTCTCGTGCACCTTTGCTGGGATTCAAACACTTGCAGCCTCCGTTTACAATCCACAAGgt-ttggcaatcttaagca-tcaacgg---ttttagctcgttcccgtttttctttcttag----------------------------------------
    |||||  | ||     | || |||||||| || || || |||||||| || || || || |||||| |||||||||| || ||||| ||||||||||| ||    |||||      |  ||||   ||  |  || ||     |      |||  |                                        
ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtattcttgatcttttatggttgacggggattcaaaatcatttatactaactcctctatgttcccattttgctttgttcttaaaatgattaaagcatgct

upper sequence: EFJ30786 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: GLYMA19G37310.2 (Glycine max), 5'ss of exon 14
TGTCAAAGAAAGATGCGCTGTGCTCAAATTTGTAACGAGCTGCTCTCGTGCACCTTTGCTGGGATTCAAACACTTGCAGCCTCCGTTTACAATCCACAAGgtttggcaatcttaagcatcaacggttttagctcgttcccgtttttctttcttag------------------------------------------------
    |||||  | ||     | || |||||||| || || || |||||||| || || || || |||||| |||||||||| || ||||| ||||||||||| ||    |||| | | |  | | ||   |  | |||    |  | | |  ||                                                 
ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtatgt---tcttgatcttttatgattgatgggcattcaaaatcatttatactaactcctctatgttcccattttgctttgttcttaaatgattaaagcttgg