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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGGTCATACGAACGAAAAGAACTTTGTCGGGCTGTCTGTCACTTCTGATTACATCGCCTGTGGGAGCGAGACAAACGAGGTCTATGTTTACCACAAGgtaagcctggtttttagagctgcattgtcaagacgaagtagaacaaatctcaatggtgatgtttcag

Basic information

species Selaginella moellendorffii
transcript EFJ30221
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30221 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 12
TAGAGGTCATACGAACGAAAAGAACTTTGTCGGGCTGTCTGTCACTTCTGATTACATCGCCTGTGGGAGCGAGACAAACGAGGTCTATGTTTACCACAAGgtaagcctggtttttagagctgca-ttgtcaagacgaagtagaacaaatctcaatggtgatgtttcag-------------------------------------------------------------------
 ||||| || | ||| |||||||||||||| ||||||||||| | |   || ||||| ||||| ||||| || || || ||||| | |||||||||||||||||        ||     ||||  ||||            ||   |   | |   |  ||| || |                                                                    
CAGAGGGCACAAGAATGAAAAGAACTTTGTTGGGCTGTCTGTAAATAACGAGTACATTGCCTGCGGGAGTGAAACGAATGAGGTTTTTGTTTACCACAAGgtaattgcaagcttattgcctgctcttgtttccgtatctgtgattcagcattatgtgccatgcttaactgtacaggttggtctcctgtggcaccatataccattctaacttcaagtaactctgtaccaattgcag

upper sequence: EFJ30221 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 12
TAGAGGTCATACGAACGAAAAGAACTTTGTCGGGCTGTCTGTCACTTCTGATTACATCGCCTGTGGGAGCGAGACAAACGAGGTCTATGTTTACCACAAGgt-----------aagcctggtttttagagct--gcattgtcaagacgaagtagaacaaatctcaa--tggtgatgtttcag-----------------------------
 ||||| ||||| ||||| ||||||||||| || ||  | || |     || ||  |||||||||| |||||||||||||| || ||||| || ||||||||           || |||    | |  |  |  ||||| |  |  |    |  |   | | ||||  ||  | || |  ||                             
CAGAGGACATACTAACGAGAAGAACTTTGTGGGTCTCACAGTGAACAGCGAGTATCTCGCCTGTGGAAGCGAGACAAACGAAGTATATGTATATCACAAGgttcacaaatccgaaacctctgctctcaactttagcatttttcattcatgattcacagattttcaacctgtcgttgctcaagtattttaaaatgtgaatgatgcgatgcag