1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
ACAAGACATTATGAACAACACGAAGCTATGTGAAGGATATCTGACTCTCGCACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAGgtacgggcgtttctttgactttctcctcattcgagttgtaccacag
species | Selaginella moellendorffii |
transcript | EFJ26022 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CGCGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAG GCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCTEST: gi|169097110|gb|FE498956.1|FE498956
genomic: CACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAGgtacgggcgt ... tgtaccacagGCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCT
EST: CGCGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAG GCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCTEST: gi|169059061|gb|FE468206.1|FE468206
genomic: CACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAGgtacgggcgt ... tgtaccacagGCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCT
EST: CACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAG GCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCTEST: gi|169019958|gb|FE431023.1|FE431023
genomic: CACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAGgtacgggcgt ... tgtaccacagGCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCT
EST: CACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAG GCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCTEST: gi|169064769|gb|FE473736.1|FE473736
genomic: CACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAGgtacgggcgt ... tgtaccacagGCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCT
EST: CGCGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAG GCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCTEST: gi|169028509|gb|FE439924.1|FE439924
genomic: CACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAGgtacgggcgt ... tgtaccacagGCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCT
EST: ATGGAGCCCAAAGTACCTGAAGATATATACAAG GCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCTEST: gi|169066441|gb|FE474664.1|FE474664
genomic: ATGGAGCCCAAAGTACCTGAAGATATATACAAGgtacgggcgt ... tgtaccacagGCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCT
EST: CGCGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAG GCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCTEST: gi|169097981|gb|FE498778.1|FE498778
genomic: CACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAGgtacgggcgt ... tgtaccacagGCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCT
EST: CGCGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAG GCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCT
genomic: CACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAGgtacgggcgt ... tgtaccacagGCTCATTTAATTGATGGAAGAGCGAGTGCCGGAGCTAGTGTTGATTCGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAGACATTATGAACAACACGAAGCTATGTGAAGGATATCTGACTCTCGCACGGGATCTTGATGTGATGGAGCCCAAAGTACCTGAAGATATATACAAGgtacgggcgtttctttgactttctcctcattcgagttgtaccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA