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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGAAGTTGGAAGGCTGGGATATCCATCCGGTGGACCCGGTAACGTCTTTGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttgcgagcgtccggatttattaagctgtttgactattggctgtaaactttag

Basic information

species Selaginella moellendorffii
transcript EFJ25849
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169093669|gb|FE492375.1|FE492375
EST:     TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG                         GTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
EST: gi|169054840|gb|FE463444.1|FE463444
EST:     TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG                         GCACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
EST: gi|169038934|gb|FE449651.1|FE449651
EST:     TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG                         GTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
EST: gi|70670362|gb|DN838939.1|DN838939
EST:     TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG                         GTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
EST: gi|169088100|gb|FE496459.1|FE496459
EST:     TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG                         GTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
EST: gi|169054839|gb|FE463443.1|FE463443
EST:     TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCG                         GCACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG
genomic: TGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 9

ACCGAAGTTGGAAGGCTGGGATATCCATCCGGTGGACCCGGTAACGTCTTTGGCTTTAAACTTAAGGACAGGAACGGGCGGGTCCATAGATTCAACTGCGgtacgttttg ... taaactttagGTACGGAGAGCCTTACGGAGCTTGTATCTGCGGTAGTCCAACGTCTTGGAGATGATATAGATCGGAACAAGCCTCCTCAAATCCTG




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