1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTGgtcagtgcctacgtgtttttcttgccttttcttttctctcaacttttgattttcag
species | Selaginella moellendorffii |
transcript | EFJ21599 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTG ATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCTEST: gi|169028987|gb|FE438127.1|FE438127
genomic: GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTGgtcagtgcct ... tgattttcagATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCT
EST: GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTG ATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTTTEST: gi|169018790|gb|FE426767.1|FE426767
genomic: GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTGgtcagtgcct ... tgattttcagATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCT
EST: GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTG ATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCTEST: gi|169088819|gb|FE492836.1|FE492836
genomic: GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTGgtcagtgcct ... tgattttcagATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCT
EST: GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTG ATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCTEST: gi|169088818|gb|FE492835.1|FE492835
genomic: GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTGgtcagtgcct ... tgattttcagATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCT
EST: GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTG ATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCT
genomic: GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTGgtcagtgcct ... tgattttcagATCCAACGTATATGATCCGAGCAATCCGGAGCAACGCCTCGGACAATGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCACTTCACCGAGAAGAAGGAGATCATCAACCTCAAGTACATTGgtcagtgcctacgtgtttttcttgccttttcttttctctcaacttttgattttcag
- - - - - - - AAGAAG
- - - - - - - - - AAGGAG
- - - - - - - - - AGGAGA
- - - - - - - - - - GGAGAT
- - - - - - - - - - GAGATC
- - - - - - - - - - - AGATCA